View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10314_high_2 (Length: 346)
Name: NF10314_high_2
Description: NF10314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10314_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 25455626 - 25455325
Alignment:
| Q |
19 |
cacagagaaattgtgggtattgattatgaggcacagagcgacactggttctattattttgaactcaatcatgaaggctcgtaacattttcttttatgtac |
118 |
Q |
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| T |
25455626 |
cacagagaaattgtgggtcctgattatgaggcacagagcgacactggttctattatttagaactcaatcatgaaggctcgtaacattttcttttatgtac |
25455527 |
T |
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| Q |
119 |
atggtttaagaatatgtgctggaaatttttccattttggtacatgattggtactacaaaattagagattatcaactatgtgatgtcctttcgaccnnnnn |
218 |
Q |
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| T |
25455526 |
atggtttaagaatatgtgctggaaatttttccattttggtacatgattggtactacaaaattagagattatcaactatgtgatgtcctttcgaccaaaaa |
25455427 |
T |
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| Q |
219 |
nnnnttgttcttgtcctcaagcaatttgcatggttaaataaaattttgagttaatatatatttacccctataatataagcgactttcggtttacctctgt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25455426 |
aaaattgttcttgtcctcaagcaatttgcatggttaaataaaa--ttgagttaatatatatttacccctataatataagcgactttcggtttacctctgt |
25455329 |
T |
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| Q |
319 |
aaat |
322 |
Q |
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|||| |
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| T |
25455328 |
aaat |
25455325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 16734409 - 16734362
Alignment:
| Q |
268 |
gttaatatatatttacccctataatataagcgactttcggtttacctc |
315 |
Q |
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| T |
16734409 |
gttaatacatgtttacccctataatataagcgattttcggtgtacctc |
16734362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 18359568 - 18359524
Alignment:
| Q |
268 |
gttaatatatatttacccctataatataagcgactttcggtttac |
312 |
Q |
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| T |
18359568 |
gttaatacatgtttacccctgtaatattagcgactttcggtttac |
18359524 |
T |
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