View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10314_low_1 (Length: 534)

Name: NF10314_low_1
Description: NF10314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10314_low_1
NF10314_low_1
[»] chr7 (5 HSPs)
chr7 (1-521)||(42414892-42415412)
chr7 (1-150)||(38176207-38176356)
chr7 (36-150)||(8178029-8178143)
chr7 (27-150)||(38195558-38195681)
chr7 (106-150)||(10486560-10486604)
[»] scaffold0094 (1 HSPs)
scaffold0094 (1-521)||(14856-15373)
[»] chr3 (8 HSPs)
chr3 (1-521)||(53919917-53920440)
chr3 (5-264)||(1929998-1930257)
chr3 (1-150)||(1527265-1527414)
chr3 (3-150)||(25500952-25501099)
chr3 (1-76)||(8690524-8690599)
chr3 (1-76)||(9042393-9042468)
chr3 (95-289)||(26924303-26924496)
chr3 (102-155)||(40316324-40316377)
[»] chr2 (9 HSPs)
chr2 (1-372)||(35581373-35581743)
chr2 (1-150)||(31015410-31015559)
chr2 (1-150)||(4318687-4318836)
chr2 (1-150)||(28626321-28626470)
chr2 (203-314)||(29370229-29370340)
chr2 (1-146)||(6409598-6409743)
chr2 (36-150)||(34212768-34212882)
chr2 (1-59)||(29370388-29370446)
chr2 (102-146)||(40357048-40357092)
[»] chr6 (4 HSPs)
chr6 (5-223)||(1100942-1101160)
chr6 (172-293)||(1083075-1083197)
chr6 (172-293)||(1085715-1085837)
chr6 (40-130)||(28909706-28909796)
[»] chr5 (7 HSPs)
chr5 (1-150)||(12186854-12187003)
chr5 (36-150)||(22497645-22497759)
chr5 (1-146)||(4428968-4429113)
chr5 (2-155)||(41787821-41787974)
chr5 (44-150)||(43391059-43391165)
chr5 (103-155)||(32912850-32912902)
chr5 (118-150)||(26917409-26917441)
[»] chr8 (6 HSPs)
chr8 (1-150)||(31385745-31385893)
chr8 (3-151)||(2703929-2704077)
chr8 (36-150)||(8618319-8618433)
chr8 (101-150)||(15074411-15074460)
chr8 (189-258)||(31385930-31385999)
chr8 (105-160)||(11743945-11744000)
[»] chr1 (6 HSPs)
chr1 (36-160)||(4816699-4816823)
chr1 (36-150)||(46342966-46343080)
chr1 (1-150)||(5299436-5299585)
chr1 (1-150)||(46496791-46496939)
chr1 (89-150)||(19023321-19023382)
chr1 (36-150)||(44585732-44585846)
[»] chr4 (1 HSPs)
chr4 (36-150)||(29542205-29542319)


Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 42415412 - 42414892
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42415412 aaaactcatattatttcatttctcacaatagtttcaatatatgatggaatcaaatcaaactcctggtgacgagcattcaatctagacgccctagctaacg 42415313  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactaccaaactc 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42415312 tatgagcgacaaaattagcttgtctcctaacaaaacttatcctaaagtttggataatgttttaaacgcgaccgacattcggatatgatactaccaaactc 42415213  T
Q  201 cgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaagccagtagatg 300  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||    
T  42415212 cgcttgattgctattcctatcaaaaatgctatcaaccactagtttgcaatctagttctacaagcaccttcgacagtcctaatctgccaagccaagagatg 42415113  T
Q  301 gcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgcctttacgaacatacctcgatgattccgaatgc 400  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42415112 gcatcacgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgcctttacgaacatacctcgatgattccgaatgc 42415013  T
Q  401 acatacctatcccaaaacagttttgctccttgaacatggctgcgtccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgctg 500  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42415012 acatacctatcccaaaacagttttgctcctcgaacatggctgcgtccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgctg 42414913  T
Q  501 ctgctgattttgcacaggttc 521  Q
    |||||||||||||||||||||    
T  42414912 ctgctgattttgcacaggttc 42414892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 38176207 - 38176356
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    ||||||||||||||||||||  |||||  | ||  ||||||||||||||||||||||||  ||||||||||||| |  ||| | ||| ||||||| ||      
T  38176207 aaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaac 38176306  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 150  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  38176307 tatgagcgacaacattcgcttgtctcctaacaaaacttatcttaaagttt 38176356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 8178029 - 8178143
Alignment:
Q  36 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 135  Q
    |||||||||||||||| |||||||  | ||| ||| ||||| |||| | ||| |||||||||| ||||| || |||||||| |||||||||||| |||||    
T  8178029 aatacaagatggaatccaatcaaaaacgtggcgactagcatacaattttgactccctagctaatgtatgggcaacaaaatttgcttgtctcctagcaaaa 8178128  T
Q  136 cttatcttaaagttt 150  Q
    |||||||||||||||    
T  8178129 cttatcttaaagttt 8178143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 38195558 - 38195681
Alignment:
Q  27 aatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctc 126  Q
    |||||| ||||||||||||||||||||||  ||| ||||||||| ||||| |||  | | ||||| ||||||  ||||||||||| |||| |||||||||    
T  38195558 aatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatgcaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctc 38195657  T
Q  127 ctaacaaaacttatcttaaagttt 150  Q
    |  |  ||||||||||||||||||    
T  38195658 cagatgaaacttatcttaaagttt 38195681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 10486560 - 10486604
Alignment:
Q  106 gcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 150  Q
    |||||| |||| |||||||||||||||||||||||||||||||||    
T  10486560 gcgacataatttgcttgtctcctaacaaaacttatcttaaagttt 10486604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 15373 - 14856
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    ||||||||||| ||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15373 aaaactcatattatttcatttctcacaatagtttcaatataaaatggaattaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 15274  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactaccaaactc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||   |||||||    
T  15273 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttggataatgttttaaacacgaccgacattcggatatgatac---caaactc 15177  T
Q  201 cgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaagccagtagatg 300  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||    
T  15176 cgcttgattgctattcctatcaaaaatgctatcaaccactagtttgcaatctagttctataagcaccttcgacagtcctaatcttccaagccaagagatg 15077  T
Q  301 gcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgcctttacgaacatacctcgatgattccgaatgc 400  Q
      |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15076 aaatcacgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgcggctgcctttacgaacatacctcgatgattccgaatgc 14977  T
Q  401 acatacctatcccaaaacagttttgctccttgaacatggctgcgtccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgctg 500  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14976 acatacctatcccaaaatagttttgctcctcgaacatggctgcgtccacgttgcatttaacaaacttctcatctggtggctgccaaattgctacttgctg 14877  T
Q  501 ctgctgattttgcacaggttc 521  Q
    |||||||||||||||||||||    
T  14876 ctgctgattttgcacaggttc 14856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 53920440 - 53919917
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  53920440 aaaactcatgttatttcatttctcacaatagtttcaatacaagatggaatcaaaacaaactcttggtgacgagcattcaatctagacgccctagctaacg 53920341  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactaccaaactc 200  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||| | ||||| ||||||| ||||||||||||    
T  53920340 tatgagcgacaaaattagcttgtcttctaacaaaactcatcttaaagtttggataatgttttaaaagcgaccggcattcagatatgagactaccaaactc 53920241  T
Q  201 cgcttgattgct---attcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaagccagtag 297  Q
    ||||||||||||   |||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||  ||    
T  53920240 cgcttgattgctgctattcctatcaaaaatgctatcaaacactagtttgcaatccagttctataagcaccttcgacagtcctaatctgccaagccaagag 53920141  T
Q  298 atggcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgcctttacgaacatacctcgatgattccgaa 397  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||    
T  53920140 atggcatcacgcaatccaactgcttcttcttctcgtgggagaggtttgccttcataccaggttgtagctgcctttacgaacagacctcgatgattccgaa 53920041  T
Q  398 tgcacatacctatcccaaaacagttttgctccttgaacatggctgcgtccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttg 497  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53920040 tgcacatacctatcccaaaacagttttgctcctcgaacatggctgcatccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttg 53919941  T
Q  498 ctgctgctgattttgcacaggttc 521  Q
    ||||| ||||||||||||||||||    
T  53919940 ctgctactgattttgcacaggttc 53919917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 1930257 - 1929998
Alignment:
Q  5 ctcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatg 104  Q
    ||||||| ||||| ||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||  ||||| |||||||  ||||| |||||    
T  1930257 ctcatattatttcctttctcaaaagagtctcaatacaagatggaatcaaatcaaactgttggtgacgagcatgtaatcttgacgcccctgctaaagtatg 1930158  T
Q  105 agcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactaccaaactccgct 204  Q
    || |||| ||||||| | ||||||| |||||||||| ||||||||| |||  | || |||| | |  ||||| |||||||| |||||||||||||||| |    
T  1930157 agtgacataattagcatttctcctagcaaaacttattttaaagtttggatgttattgtaaaagagcttgacaatcggatataatactaccaaactccgat 1930058  T
Q  205 tgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagc 264  Q
    |||||  ||||||||||||  ||||||||||| ||||  || ||||||||||||||||||    
T  1930057 tgattcatattcctatcaactatgctatcaaccactagcttacaatctagttctataagc 1929998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 1527414 - 1527265
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    ||||||||||||||||||||  |||||  | ||  ||||||||||||||||||||||||  ||||||||||||| |  ||| | ||| ||||||| ||      
T  1527414 aaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaac 1527315  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 150  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  1527314 tatgagcgacaacattcgcttgtctcctaacaaaacttatcttaaagttt 1527265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 3 - 150
Target Start/End: Complemental strand, 25501099 - 25500952
Alignment:
Q  3 aactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgta 102  Q
    |||| |||| ||||||||  ||||||||||||||||||||||||||||||||| |||  || |||||||||||| |||| | || ||||| |||||  ||    
T  25501099 aacttatattatttcattcatcacaatagtttcaatacaagatggaatcaaatgaaagactcggtgacgagcatacaattttgatgcccttgctaaacta 25501000  T
Q  103 tgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 150  Q
    || |||||| |||| ||||||||||| ||| || ||||||||||||||    
T  25500999 tgggcgacacaatttgcttgtctccttacataatttatcttaaagttt 25500952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8690599 - 8690524
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcat 76  Q
    ||||||||||| |||||||||||||||||||  |||||||| |||||||||||||||||| | |||||||||||||    
T  8690599 aaaactcatattatttcatttctcacaatagagtcaatacacgatggaatcaaatcaaacacctggtgacgagcat 8690524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9042468 - 9042393
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcat 76  Q
    ||||||||||| |||||||||||||||||||  |||||||| |||||||||||||||||| | |||||||||||||    
T  9042468 aaaactcatattatttcatttctcacaatagagtcaatacacgatggaatcaaatcaaacacctggtgacgagcat 9042393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 289
Target Start/End: Complemental strand, 26924496 - 26924303
Alignment:
Q  95 ctaacgtatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactacc 194  Q
    |||| ||||||||||||| |||| |||||||| ||  ||||||||||||||| ||| |||  | ||| |||   |  ||||| || ||||| || |||||    
T  26924496 ctaaagtatgagcgacaacattaacttgtctcttagtaaaacttatcttaaactttggatgttctttaaaaaa-gcttgacaatcagatataatgctacc 26924398  T
Q  195 aaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaa 289  Q
    ||||||  |||| ||| ||||||||||||  ||||||| || |||||   | |||||||||||||||||||||||||| || |||||||| ||||    
T  26924397 aaactctacttggttggtattcctatcaactatgctataaattactagcgtacaatctagttctataagcaccttcgataggcctaatctaccaa 26924303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 40316377 - 40316324
Alignment:
Q  102 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgata 155  Q
    |||||| ||| |||||||||||||| |||| |||||||| ||||||||| ||||    
T  40316377 atgagcaacataattagcttgtctcataactaaacttatgttaaagtttggata 40316324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 4e-61; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 35581373 - 35581743
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    ||||| ||||| |||||||||||| ||||| ||| |||| |||||||||||||||||||   || ||||| || || |||||| ||| |||| ||  | |    
T  35581373 aaaacgcatattatttcatttctcccaataattttaatataagatggaatcaaatcaaaaatttagtgactaggatacaatcttgacacccttgcaga-g 35581471  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactaccaaactc 200  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||||||  |||| |||| |||| |||| ||||||||  |||||||| ||||||| ||    
T  35581472 tatgagcgacaatattagtttgtcttctaacaaaacttatcttaaagttatgatattgttgtaaaagcgagtgacattcatatatgatattaccaaagtc 35581571  T
Q  201 cgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaagccagtagatg 300  Q
    | ||| |||| | |||| |||||  |||||||||||||||| || |||||||||||||||| ||||||| ||  ||||| ||   |||||||| || ||     
T  35581572 cactttattggtgttcccatcaattatgctatcaactactacttggcaatctagttctatatgcacctttgatggtcctcatagaccaagccaataaata 35581671  T
Q  301 gcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgccttt 372  Q
    |||||||| ||||| |||||||| ||||||  |||| |||| |||||||||| |||  ||||||||||||||    
T  35581672 gcatcatgtaatcctactgcttccgcttcttttgggggaggattgccttcatgccaagttgtggctgccttt 35581743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 31015410 - 31015559
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    ||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||| || ||  ||| || | |||||      
T  31015410 aaaactcatattatttcatttctcacaatatagtcaatacaagatggaatcaaatcaaacacttggtgacgagcatgcattcgtgacacctttgctaagc 31015509  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 150  Q
    |||| | ||||||||| ||||| |||||||||||| ||||||||||||||    
T  31015510 tatgggtgacaaaatttgcttgcctcctaacaaaatttatcttaaagttt 31015559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 4318687 - 4318836
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    ||||||||||||||||||||  |||||  | ||  ||||||||||||||||||||||||  ||||||||||||| |  ||| | ||| ||||||| ||      
T  4318687 aaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaac 4318786  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 150  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  4318787 tatgagcgacaacatttacttgtctcctaacaaaacttatcttaaagttt 4318836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 28626321 - 28626470
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    |||||||||| |||||||||  |||||  | ||  ||||||| ||||||||||||||||  ||||||||||||| |  ||| | ||| || |||| ||      
T  28626321 aaaactcataccatttcattcatcacacaatttggaatacaaaatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccttagcgaaac 28626420  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 150  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  28626421 tatgagcgacaacattcgcttgtctcctaacaaaacttatcttaaagttt 28626470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 29370340 - 29370229
Alignment:
Q  203 cttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaagccagtagatggc 302  Q
    |||||||  ||||||||||||  ||||||||||| ||||  || ||||||||||||||||||||||| ||||  |||||||| ||||||||  | || ||    
T  29370340 cttgattagtattcctatcaattatgctatcaaccactagcttacaatctagttctataagcacctttgacaagcctaatctaccaagccaagaaatagc 29370241  T
Q  303 atcatgcaatcc 314  Q
    |||||| |||||    
T  29370240 atcatgtaatcc 29370229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 6409743 - 6409598
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    ||||||||||||||||||||  |||||  | ||  |||  ||||||||||||||| |||  ||||||||||||| |  ||| | ||| | ||||| ||      
T  6409743 aaaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaattaaagacttggtgacgagcttgtaatattgacactctagcgaaac 6409644  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaa 146  Q
    || ||||||||| ||| |||| ||||||||||||||||||||||||    
T  6409643 tacgagcgacaatattcgcttctctcctaacaaaacttatcttaaa 6409598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 34212882 - 34212768
Alignment:
Q  36 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 135  Q
    |||| |||||||||||||||||||  | |||||| || |||  ||| | ||| | || |||||  ||| |||||||| ||| ||||||||||||||||||    
T  34212882 aatataagatggaatcaaatcaaagacatggtgaggaacatgtaatattgacactcttgctaagctataagcgacaacattcgcttgtctcctaacaaaa 34212783  T
Q  136 cttatcttaaagttt 150  Q
     ||||||||||||||    
T  34212782 tttatcttaaagttt 34212768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29370446 - 29370388
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaa 59  Q
    |||||| |||| |||||| |||||| || |||||||||||||||| ||||| |||||||    
T  29370446 aaaacttatattatttcacttctcaaaagagtttcaatacaagatagaatctaatcaaa 29370388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 40357048 - 40357092
Alignment:
Q  102 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaa 146  Q
    |||||| |||||||||| ||||||| |||| ||||||||||||||    
T  40357048 atgagcaacaaaattagtttgtctcataactaaacttatcttaaa 40357092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 1100942 - 1101160
Alignment:
Q  5 ctcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatg 104  Q
    ||||||| |||||| |||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||  ||||| ||| |||   |||| |||||    
T  1100942 ctcatattatttcacttctcaaaagagtctcaatacaagatggaatcaaatcaaactgttggtgacgagcatgtaatcttgactcccctactaaagtatg 1101041  T
Q  105 agcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgttttaaacgcgactgacattcggatatgatactaccaaactccgct 204  Q
    |||||||||||| | |||||||||| |||||||| ||||||||||| |||  |||| |||| | |  ||||| |||||||| ||||||| ||||| ||||    
T  1101042 agcgacaaaatttgattgtctcctagcaaaacttttcttaaagtttggatgttgttgtaaaagagcttgacaatcggatataatactacaaaacttcgct 1101141  T
Q  205 tgattgctattcctatcaa 223  Q
    || |||  |||| ||||||    
T  1101142 tggttggcattcatatcaa 1101160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 1083075 - 1083197
Alignment:
Q  172 tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaa-tttgcaatctagttctataagcaccttc 270  Q
    ||||| || |||||||||| |||||||||| |||| ||| | |||||||| |  ||||||||||  || || ||| |||||||||||||||| ||||||     
T  1083075 tgacaatcagatatgatacaaccaaactccacttggttggtcttcctatcgactatgctatcaatcaccaagtttacaatctagttctataaacaccttt 1083174  T
Q  271 gacagtcctaatctgccaagcca 293  Q
    || |  |||||||| ||||||||    
T  1083175 gataagcctaatctaccaagcca 1083197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 1085715 - 1085837
Alignment:
Q  172 tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaa-tttgcaatctagttctataagcaccttc 270  Q
    ||||| || |||||||||| |||||||||| |||| ||| | |||||||| |  ||||||||||  || || ||| |||||||||||||||| ||||||     
T  1085715 tgacaatcagatatgatacaaccaaactccacttggttggtcttcctatcgactatgctatcaatcaccaagtttacaatctagttctataaacaccttt 1085814  T
Q  271 gacagtcctaatctgccaagcca 293  Q
    || |  |||||||| ||||||||    
T  1085815 gataagcctaatctaccaagcca 1085837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 28909706 - 28909796
Alignment:
Q  40 caagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaa 130  Q
    ||||||||||||||||||||  ||||||||||||| |  ||| | ||| ||||||| ||  |||||| ||||| ||| |||||||||||||    
T  28909706 caagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagtgacaacattcgcttgtctcctaa 28909796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 12187003 - 12186854
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    |||||||| || |||| ||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||| ||  |  ||| || | |||||      
T  12187003 aaaactcaaattattttatttctcacaatagagtcaatacaagatggaatcaaatcaaacacttggtgacgagcatgcatccgtgacacctttgctaagc 12186904  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 150  Q
    |||| |||||  |||| ||||| |||||||||||||||||||||||||||    
T  12186903 tatgggcgacggaattcgcttgcctcctaacaaaacttatcttaaagttt 12186854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 22497645 - 22497759
Alignment:
Q  36 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 135  Q
    ||||||||| ||||||||||||||  |  ||||||||||||  ||| | ||| |||| |||||  |||||| ||||| ||| ||||||||||||||||||    
T  22497645 aatacaagaaggaatcaaatcaaagacacggtgacgagcatgtaatattgacacccttgctaagttatgagtgacaacattcgcttgtctcctaacaaaa 22497744  T
Q  136 cttatcttaaagttt 150  Q
    |||||||||||||||    
T  22497745 cttatcttaaagttt 22497759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 4429113 - 4428968
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    ||||||||||  ||||||||| |||||||||  |||||| ||||||||||||||||||||  ||| | |||||||| || ||  ||| || | |||||      
T  4429113 aaaactcataatatttcatttatcacaatagagtcaatagaagatggaatcaaatcaaacatttgctaacgagcatacattcctgacacctttgctaagc 4429014  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaa 146  Q
    |||| | |||| |||| ||||| |||||||||||||||||||||||    
T  4429013 tatgggtgacagaatttgcttgcctcctaacaaaacttatcttaaa 4428968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 155
Target Start/End: Original strand, 41787821 - 41787974
Alignment:
Q  2 aaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgt 101  Q
    ||||| |||||||||||||||||||||||     |||||||||||||||||| || ||  |||| |||  ||| ||  ||   |||||||| |||||       
T  41787821 aaacttatatcatttcatttctcacaatatgggaaatacaagatggaatcaactcgaaaacttgatgattagcgttatattgtgacgcccttgctaatca 41787920  T
Q  102 atgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgata 155  Q
    |||||| ||| ||||||||||||||||||||||| |||||| ||||||| ||||    
T  41787921 atgagcaacataattagcttgtctcctaacaaaatttatctcaaagtttggata 41787974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 43391059 - 43391165
Alignment:
Q  44 atggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaacttatctt 143  Q
    ||||||||||||||||  | || |||| ||||| || | | ||| |||| ||||| ||||| |||||| |||| |||||||||| || |||||||||| |    
T  43391059 atggaatcaaatcaaaaacatgatgactagcatacagttttgacacccttgctaaagtatgggcgacataatttgcttgtctccgaataaaacttatcat 43391158  T
Q  144 aaagttt 150  Q
    |||||||    
T  43391159 aaagttt 43391165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 32912902 - 32912850
Alignment:
Q  103 tgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgata 155  Q
    ||||| |||||||| ||| ||| ||||||||||||||||||||||||| ||||    
T  32912902 tgagcaacaaaatttgctcgtcgcctaacaaaacttatcttaaagtttggata 32912850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 26917441 - 26917409
Alignment:
Q  118 gcttgtctcctaacaaaacttatcttaaagttt 150  Q
    ||||||||||||| |||||||||||||||||||    
T  26917441 gcttgtctcctaataaaacttatcttaaagttt 26917409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 31385745 - 31385893
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    |||| |||||| ||||| ||||||| || |||||||| ||||||| ||||||||||||||| ||| |||| |||||  ||| | ||| |||| ||||| |    
T  31385745 aaaaatcatattatttcctttctca-aagagtttcaacacaagatagaatcaaatcaaactgttgatgacaagcatgtaattttgacaccct-gctaaag 31385842  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaactt-atcttaaagttt 150  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  31385843 tatgagtgacaaaattagcttgtctcctaacaaaacttaatcttaaagttt 31385893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 2703929 - 2704077
Alignment:
Q  3 aactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgta 102  Q
    ||||||||||||||||||| ||| |||||    |||| ||||||||||||||||| |    ||||||| ||| | |||  |  |||| || | ||| |||    
T  2703929 aactcatatcatttcatttatcaaaatagaggaaatataagatggaatcaaatcatagatatggtgacaagcgtccaactttaacgctcttgttaaagta 2704028  T
Q  103 tgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttc 151  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  2704029 tgagcgacataatttgcttgtctcctaacaaaacttatcttaaagtttc 2704077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 8618319 - 8618433
Alignment:
Q  36 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 135  Q
    ||||||||||||||||||||| ||    |||||||||| ||  ||| | ||| |||| |||||  |||||||||||| ||| ||||||||||||||||||    
T  8618319 aatacaagatggaatcaaatcgaagaaatggtgacgaggatgtaatattgacacccttgctaagctatgagcgacaacattcgcttgtctcctaacaaaa 8618418  T
Q  136 cttatcttaaagttt 150  Q
    |||||||| ||||||    
T  8618419 cttatcttgaagttt 8618433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 15074411 - 15074460
Alignment:
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 150  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  15074411 tatgagcgacacaatttgcttgtcttctaacaaaacttatcttaaagttt 15074460  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 31385930 - 31385999
Alignment:
Q  189 actaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttct 258  Q
    |||||| ||||||| ||||||| | |||||||||| |||||||||||| ||||  ||||| |||||||||    
T  31385930 actaccgaactccgtttgattggtgttcctatcaagaatgctatcaaccactagcttgcagtctagttct 31385999  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 11744000 - 11743945
Alignment:
Q  105 agcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttcgataatgtt 160  Q
    ||||||| |||| | ||||||||| |||||| |||||||||||||| |||||||||    
T  11744000 agcgacataatttgtttgtctccttacaaaatttatcttaaagtttggataatgtt 11743945  T

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Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 4816823 - 4816699
Alignment:
Q  36 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 135  Q
    |||| |||||| ||||||||||||  ||||||||||||||| |||| | ||| |||| |||||  |||| |||||| |||| ||||||||||| ||| ||    
T  4816823 aatataagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataatttgcttgtctccttacataa 4816724  T
Q  136 cttatcttaaagtttcgataatgtt 160  Q
     |||||||||||||| || ||||||    
T  4816723 tttatcttaaagtttggaaaatgtt 4816699  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 46343080 - 46342966
Alignment:
Q  36 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 135  Q
    ||||||||||| ||||||||||||    ||||||| | |||  ||| | |||  ||| |||||  |||||||||||| ||| ||||||||||||||||||    
T  46343080 aatacaagatgaaatcaaatcaaagatatggtgaccaacatgtaatattgacatccttgctaagatatgagcgacaacattcgcttgtctcctaacaaaa 46342981  T
Q  136 cttatcttaaagttt 150  Q
    ||||||||| |||||    
T  46342980 cttatcttagagttt 46342966  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 5299585 - 5299436
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    ||||||||||| |||| ||| || | ||||||  |||||||||||||||||||||  ||  | ||||||||||||  |||| | | | |||| |||||      
T  5299585 aaaactcatattattttattccttaaaatagtagcaatacaagatggaatcaaattgaaaacgtggtgacgagcacacaattttgcctcccttgctaagc 5299486  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 150  Q
     ||| |||||  |||| |||||||| ||||||||| ||||||||||||||    
T  5299485 aatgggcgaccgaattcgcttgtcttctaacaaaatttatcttaaagttt 5299436  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 46496939 - 46496791
Alignment:
Q  1 aaaactcatatcatttcatttctcacaatagtttcaatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacg 100  Q
    ||||||||||| |||||||| |||| | ||||  ||||||||||||||||||||| |||  | ||||||||||||| |||  | | | || | |||||      
T  46496939 aaaactcatattatttcattcctcaga-tagtagcaatacaagatggaatcaaataaaaaacctggtgacgagcatacaaatttgcctcctttgctaagc 46496841  T
Q  101 tatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 150  Q
     ||| ||||   |||||| ||||||||||||||||| |||||||||||||    
T  46496840 aatgtgcgatcgaattagtttgtctcctaacaaaacctatcttaaagttt 46496791  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 19023321 - 19023382
Alignment:
Q  89 ccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagttt 150  Q
    ||||||||||  |||||| || | |||| | |||||||||||||||||||||||||||||||    
T  19023321 ccctagctaagctatgagtgatataatttgtttgtctcctaacaaaacttatcttaaagttt 19023382  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 44585732 - 44585846
Alignment:
Q  36 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 135  Q
    |||||| |||||||| ||||||||  ||||||||| | |||  ||  |  || |||| |||||  |||||||||||| ||| |  |||||||| ||||||    
T  44585732 aatacatgatggaattaaatcaaaaacttggtgacaaacatgtaacatcaacacccttgctaagctatgagcgacaacattcgtctgtctcctgacaaaa 44585831  T
Q  136 cttatcttaaagttt 150  Q
    |||||||||||||||    
T  44585832 cttatcttaaagttt 44585846  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 29542319 - 29542205
Alignment:
Q  36 aatacaagatggaatcaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaa 135  Q
    |||||||||||||||| |||||||  | ||||||||||| | |||| | ||| ||||||||||   ||| |||||| |||| |||||| |||||||||||    
T  29542319 aatacaagatggaatcgaatcaaaaacatggtgacgagcgtacaattttgactccctagctaagccatgggcgacataatttgcttgtatcctaacaaaa 29542220  T
Q  136 cttatcttaaagttt 150  Q
     ||||||||||||||    
T  29542219 tttatcttaaagttt 29542205  T

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