View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10314_low_2 (Length: 382)

Name: NF10314_low_2
Description: NF10314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10314_low_2
NF10314_low_2
[»] chr5 (4 HSPs)
chr5 (76-382)||(35835725-35836017)
chr5 (226-382)||(36575112-36575268)
chr5 (211-291)||(10228735-10228811)
chr5 (75-136)||(36574958-36575018)
[»] chr8 (2 HSPs)
chr8 (15-118)||(43211359-43211462)
chr8 (236-293)||(23607247-23607304)
[»] chr2 (3 HSPs)
chr2 (226-382)||(1045308-1045464)
chr2 (77-136)||(1045153-1045211)
chr2 (207-293)||(25291112-25291197)
[»] chr4 (2 HSPs)
chr4 (207-291)||(36214319-36214402)
chr4 (207-293)||(45740785-45740870)
[»] chr6 (1 HSPs)
chr6 (212-291)||(19080326-19080401)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 76 - 382
Target Start/End: Original strand, 35835725 - 35836017
Alignment:
Q  76 ggaaaaatatacgttgacaccctatttccatccacccctttgtaccattgcccacgtggcannnnnnnnnnnnnnnacttaactctctttctctttgtac 175  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||| |||||    
T  35835725 ggaaaaatatacgtcgacaccctatttccatccacccctttgtaccattgcccacgtggcactttttttt------acttaactctctttctctctgtac 35835818  T
Q  176 cnnnnnnntctctctctcactcagaactttgtttcttctccgtccattccccccactccgcctcatcgccgtcgccggactctcacactctctacccctt 275  Q
    |       ||||||||||||| |||||| ||||||||||| |||||||||||||||||       |||||||||||||| | |||| |||||||||||||    
T  35835819 caaaaaaatctctctctcacttagaactctgtttcttctctgtccattccccccactc-------tcgccgtcgccgga-tatcactctctctacccctt 35835910  T
Q  276 tcttctccggtcatccctctcacacattagattgggataaaagaacgtaaatccacaacaaaagtaacacaaatctgcagatctgagcagagacataaat 375  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35835911 tcttctccgatcatccctctcacacattcaattgggataaaagaacgtaaatccacaacaaaagtaacacaaatctgcagatctgagcagagacatgaat 35836010  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 226 - 382
Target Start/End: Original strand, 36575112 - 36575268
Alignment:
Q  226 ccccactccgcctcatcgccgtcgccggactctcacactctctacccctttcttctccggtcatccctctcacacattagattgggataaaagaacgtaa 325  Q
    ||||||||| |||  | ||||||||| || |||| | |||||||||| |||||||||||| ||||||| |||||||||||||| ||| ||||||| ||||    
T  36575112 ccccactccaccttgttgccgtcgccagagtctccctctctctacccatttcttctccggccatccctttcacacattagatttggaaaaaagaatgtaa 36575211  T
Q  326 atccacaacaaaagtaacacaaatctgcagatctgagcagagacataaatgggttgc 382  Q
    ||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||    
T  36575212 atccacaacaaaagtaacacaaatctgcaaatcggaacagagacataaatgggttgc 36575268  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 10228735 - 10228811
Alignment:
Q  211 ttctccgtccattccccccactccgcctcatcgccgtcgccggactctcacactctctacccctttcttctccggtcatcc 291  Q
    |||||| |||||||| ||| ||||||||| |||||| ||||| ||||||    |||||||||||||||| ||||| |||||    
T  10228735 ttctccatccattcctccccctccgcctcgtcgccgccgccgtactctc----tctctacccctttcttttccggccatcc 10228811  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 36574958 - 36575018
Alignment:
Q  75 tggaaaaatatacgttgacaccctatttccatccacccctttgtaccattgcccacgtggca 136  Q
    |||||||||||||||||||| |  |||| |||||| |||||| ||||| |||||||||||||    
T  36574958 tggaaaaatatacgttgacaacgcattttcatcca-ccctttataccactgcccacgtggca 36575018  T

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Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 43211359 - 43211462
Alignment:
Q  15 gacataggccgaaaccatttttgacttgtcaaagttgatttttgcattttatttggcttatggaaaaatatacgttgacaccctatttccatccacccct 114  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43211359 gacataggccgataccatttttgacttgtcaaagttgatttttgcattttatttggcttatggaaaaaaatacgttgacaccctatttccatccacccct 43211458  T
Q  115 ttgt 118  Q
    ||||    
T  43211459 ttgt 43211462  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 23607247 - 23607304
Alignment:
Q  236 cctcatcgccgtcgccggactctcacactctctacccctttcttctccggtcatccct 293  Q
    |||| |||||| |||| ||||||| | ||||||||||||||||||||||| |||||||    
T  23607247 cctcgtcgccgccgccagactctccctctctctacccctttcttctccggccatccct 23607304  T

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Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 226 - 382
Target Start/End: Original strand, 1045308 - 1045464
Alignment:
Q  226 ccccactccgcctcatcgccgtcgccggactctcacactctctacccctttcttctccggtcatccctctcacacattagattgggataaaagaacgtaa 325  Q
    ||||||||| |||  ||||||||||| || |||| | |||||||||| |||||||||||| ||||||| |||||||||||||| | | ||||||| ||||    
T  1045308 ccccactccaccttgtcgccgtcgccagagtctccctctctctacccatttcttctccggccatccctttcacacattagatttgtaaaaaagaatgtaa 1045407  T
Q  326 atccacaacaaaagtaacacaaatctgcagatctgagcagagacataaatgggttgc 382  Q
    ||||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||    
T  1045408 atccacaacaaaagtaacacaaatctgcaaatcggaacagagacataaatggattgc 1045464  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 1045153 - 1045211
Alignment:
Q  77 gaaaaatatacgttgacaccctatttccatccacccctttgtaccattgcccacgtggca 136  Q
    |||||||||||||||||| || ||||||||||| |||||| ||||| |||||||||||||    
T  1045153 gaaaaatatacgttgacaacccatttccatcca-ccctttataccactgcccacgtggca 1045211  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 25291112 - 25291197
Alignment:
Q  207 tttcttctccgtccattccccccactccgcctcatcgccgtcgccggactctcacactctctacccctttcttctccggtcatccct 293  Q
    |||||||||||| |||||| ||| ||||||||| |||||| ||   ||||||| | ||||||| ||||||||||||||| |||||||    
T  25291112 tttcttctccgttcattcctccc-ctccgcctcgtcgccgccgttagactctccctctctctatccctttcttctccggccatccct 25291197  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 36214402 - 36214319
Alignment:
Q  207 tttcttctccgtccattccccccactccgcctcatcgccgtcgccggactctcacactctctacccctttcttctccggtcatcc 291  Q
    ||||||||||||||||||| ||| ||||||||| ||| |||||   ||||||| | ||||||||||||||||||||||| |||||    
T  36214402 tttcttctccgtccattcctccc-ctccgcctcgtcgacgtcgttagactctccctctctctacccctttcttctccggccatcc 36214319  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 45740785 - 45740870
Alignment:
Q  207 tttcttctccgtccattccccccactccgcctcatcgccgtcgccggactctcacactctctacccctttcttctccggtcatccct 293  Q
    |||||||||||| |||||| ||| ||||||||| |||||| ||   ||||||| | ||||||| ||||||||||||||| |||||||    
T  45740785 tttcttctccgttcattcctccc-ctccgcctcgtcgccgccgttagactctccctctctctatccctttcttctccggccatccct 45740870  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 19080326 - 19080401
Alignment:
Q  212 tctccgtccattccccccactccgcctcatcgccgtcgccggactctcacactctctacccctttcttctccggtcatcc 291  Q
    ||||| |||||||| ||| || |||||| || ||| ||||||||||||    |||||||||||||||||||||| |||||    
T  19080326 tctccatccattcctcccccttcgcctcgtctccgccgccggactctc----tctctacccctttcttctccggccatcc 19080401  T

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