View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10314_low_4 (Length: 344)
Name: NF10314_low_4
Description: NF10314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10314_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 225 - 329
Target Start/End: Complemental strand, 43039151 - 43039047
Alignment:
| Q |
225 |
ctatcaactaactatcatttccactnnnnnnn-tactattatttttatactagatcaacatagatatcgataataaagaaaaacatttgatttttcagta |
323 |
Q |
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| T |
43039151 |
ctatcaactaactatcatttccactaaaaaaaatactattatttttatattagatcaacatagatatcgataataaa-aaaaacatttgatttttcagta |
43039053 |
T |
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| Q |
324 |
ttaatt |
329 |
Q |
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|||||| |
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| T |
43039052 |
ttaatt |
43039047 |
T |
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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 225 - 318
Target Start/End: Complemental strand, 28885296 - 28885203
Alignment:
| Q |
225 |
ctatcaactaactatcatttccactnnnnnnntactattatttttatactagatcaacatagatatcgataataaagaaaaacatttgattttt |
318 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28885296 |
ctatcaactaactatcatttccactaaaaaaatactattatttttatattagatcaacatagatatcaataataaagaaaaacatttgattttt |
28885203 |
T |
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