View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10314_low_6 (Length: 253)

Name: NF10314_low_6
Description: NF10314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10314_low_6
NF10314_low_6
[»] chr2 (10 HSPs)
chr2 (11-253)||(44615502-44615749)
chr2 (140-253)||(44624875-44624988)
chr2 (40-253)||(39153152-39153356)
chr2 (49-100)||(39216894-39216945)
chr2 (17-71)||(44749549-44749603)
chr2 (161-253)||(39472761-39472853)
chr2 (161-251)||(39138738-39138828)
chr2 (66-253)||(39396563-39396741)
chr2 (140-252)||(39216751-39216863)
chr2 (166-242)||(39371221-39371297)
[»] scaffold0283 (1 HSPs)
scaffold0283 (50-253)||(5767-5964)
[»] chr8 (2 HSPs)
chr8 (50-253)||(44949787-44949984)
chr8 (50-253)||(44730208-44730402)
[»] chr5 (1 HSPs)
chr5 (140-250)||(17060742-17060852)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 44615749 - 44615502
Alignment:
Q  11 aagcagagagacaataagagaaatattggtgaccga-----ctaaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctaca 105  Q
    ||||| ||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  44615749 aagcatagagacaataagagaaatattggtgaccgaaccgactaaagaatttctaaatcaacataccagagactttatttgcaaaacccagtgtcctaca 44615650  T
Q  106 cagcttcacagctatcttgtattcagcagcagacgcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgat 205  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615649 cagcttcacagctatcttgtattcagcagcagacgcaacataagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgat 44615550  T
Q  206 aaaatcaatagaaatccaagagcctccaaagaattttcggtattttct 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615549 aaaatcaatagaaatccaagagcctccaaagaattttcggtattttct 44615502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 253
Target Start/End: Complemental strand, 44624988 - 44624875
Alignment:
Q  140 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 239  Q
    ||||||||  |||||| |||  ||||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||| |||    
T  44624988 gcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaataat 44624889  T
Q  240 tttcggtattttct 253  Q
    |||| |||||||||    
T  44624888 tttcagtattttct 44624875  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 253
Target Start/End: Complemental strand, 39153356 - 39153152
Alignment:
Q  40 tgaccgactaaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagac 139  Q
    |||| ||| |||| || ||||||| ||||||| ||| ||||||||||||||||||||||||| | | || | ||||||  |||||| || ||||          
T  39153356 tgactgaccaaagcatgtctaaattaacataccagaaactttatttgcaaaacccagggtccgaaatagttccacagcagtcttgtgttgagca------ 39153263  T
Q  140 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 239  Q
       ||| | ||||||| ||  ||||||||||||| ||| ||  || |||||||||| |||||||| |||| || |||||| |||||| || |||||||||    
T  39153262 ---acaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaat 39153166  T
Q  240 tttcggtattttct 253  Q
    |||| |||||||||    
T  39153165 tttcagtattttct 39153152  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 39216945 - 39216894
Alignment:
Q  49 aaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtc 100  Q
    |||| |||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  39216945 aaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtc 39216894  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 44749549 - 44749603
Alignment:
Q  17 agagacaataagagaaatattggtgaccgactaaagaatttctaaatcaacatac 71  Q
    |||||||| | |||| ||| ||||||| |||||||||||||||||||||||||||    
T  44749549 agagacaaaaggagagatactggtgactgactaaagaatttctaaatcaacatac 44749603  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 39472761 - 39472853
Alignment:
Q  161 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttct 253  Q
    ||||||||||||||||||||  || ||| |||| | ||||| || |||| || |||||| |||||| |  ||||||||||||| |||||||||    
T  39472761 aagacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttct 39472853  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 39138828 - 39138738
Alignment:
Q  161 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatttt 251  Q
    |||||||||||||||||||| ||| ||| |||| | ||||  || ||||||| |||||| || ||| || ||| ||||||||| |||||||    
T  39138828 aagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatttt 39138738  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 39396563 - 39396741
Alignment:
Q  66 acatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaagcaaaaatcttgaagac 165  Q
    |||||| ||| ||||||||||||||||||||||||  | |||||| || |||| ||||||        || || ||||| || ||||||| ||  || ||    
T  39396563 acataccagaaactttatttgcaaaacccagggtctcaaacagctccatagctgtcttgt--------gctga-gcaaccgatgcaaaaagctccaaaac 39396653  T
Q  166 ttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttct 253  Q
    |||||||||||| ||  || ||| |||||| ||||| || |||| ||| | ||| |||||| || ||||||||||||| |||||||||    
T  39396654 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtattttct 39396741  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 39216863 - 39216751
Alignment:
Q  140 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 239  Q
    |||||||| ||||||| ||  || |||||||||||| ||||  || |||||||||| ||||| || |||| ||  ||||| || ||| || |||||||||    
T  39216863 gcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaat 39216764  T
Q  240 tttcggtattttc 252  Q
    |||  ||||||||    
T  39216763 ttttagtattttc 39216751  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 39371297 - 39371221
Alignment:
Q  166 ttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaatttt 242  Q
    |||||||||||||||  || |||||||||| ||| | || |||| ||||||||| |||||| || |||||| |||||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttt 39371221  T

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Target: scaffold0283 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 253
Target Start/End: Original strand, 5767 - 5964
Alignment:
Q  50 aagaatttctaaatcaaca---tacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacag 146  Q
    |||||||||| ||||||||   ||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||| |||| ||||         |||||||    
T  5767 aagaatttctgaatcaacaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagctatattgtgttca---------gcaacag 5857  T
Q  147 aagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggt 246  Q
    | ||| ||| |||  |||| ||||||  |||||||||| ||| |||||| ||||||| || ||||||||||||||  ||| |||||||||||||||  ||    
T  5858 atgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaagaatttttagt 5957  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 253
Target Start/End: Original strand, 44949787 - 44949984
Alignment:
Q  50 aagaatttctaaatcaaca---tacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacag 146  Q
    |||||||||| ||||||||   ||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||| |||| ||||         |||||||    
T  44949787 aagaatttctgaatcaacaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagctatattgtgttca---------gcaacag 44949877  T
Q  147 aagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggt 246  Q
    | ||| ||| |||  |||| ||||||  |||||||||| ||| |||||| ||||||| || ||||||||||||||  ||| |||||||||||||||  ||    
T  44949878 atgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaagaatttttagt 44949977  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 253
Target Start/End: Complemental strand, 44730402 - 44730208
Alignment:
Q  50 aagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaag 149  Q
    |||||||||| ||||||| ||||||||||||||||  |||||  |||||||||| |||  ||| |||||||||||| |||| ||         ||||| |    
T  44730402 aagaatttcttaatcaacttacgagagactttattcacaaaatgcagggtcctaaacacattcgcagctatcttgtgttcaaca---------acagatg 44730312  T
Q  150 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 249  Q
    |  ||| ||   ||||||||||| ||||||||||| ||| |||||  |||||||  ||||||||||||||||| ||| ||||| |||||||||| |||||    
T  44730311 cgtaaagctcagagacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtatt 44730212  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 250
Target Start/End: Complemental strand, 17060852 - 17060742
Alignment:
Q  140 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 239  Q
    |||||||| |||||||  |  ||||||||||||| |||||| ||| ||| |||||| |||| ||| || ||||| |||||||| ||| ||||||| ||||    
T  17060852 gcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatgaat 17060753  T
Q  240 tttcggtattt 250  Q
     ||| ||||||    
T  17060752 attcagtattt 17060742  T

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