View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10314_low_7 (Length: 239)
Name: NF10314_low_7
Description: NF10314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10314_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 41640813 - 41640585
Alignment:
| Q |
1 |
acatatcataatttttaagttcaatagtataaaa----taccaaaactagttgatattaaaattgattgcataaacttctgtttcatcaaaaagagaaat |
96 |
Q |
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| T |
41640813 |
acatatcacaatttttaagttcaatagtataaaaaagataccaaaactagttgatattaaaattgattgcataaacttctgtttcatcaaaaagagaaat |
41640714 |
T |
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| Q |
97 |
ctttatccaaactctttgatccgattaaatttctctctttatggtggatgaaagcaagaaaacatggtcttgattttgatattcaacaatagtagattaa |
196 |
Q |
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| T |
41640713 |
ctttatccaaactctttgatccgattaaatttctctctttatggtggatgaaagcaagaaaacatggtcttgattttgatattcaacaatagtggattaa |
41640614 |
T |
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| Q |
197 |
tctgtatttgtgtttctgttaatctattg |
225 |
Q |
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| T |
41640613 |
tctgtatttatgtttctgttaatctattg |
41640585 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 33144101 - 33144173
Alignment:
| Q |
147 |
aaagcaagaaaacatggtcttgattttgatattcaacaatagtagattaatctgtatttgtgtttctgttaat |
219 |
Q |
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| T |
33144101 |
aaagcaagaaaactagggcttgattttgatattcaacaatggtggtttaatccatttttatgtttcggttaat |
33144173 |
T |
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