View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10315_low_1 (Length: 384)
Name: NF10315_low_1
Description: NF10315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10315_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 24414289 - 24414645
Alignment:
| Q |
19 |
tcttctacctatgttgtggttgctttggatatgcagcttttggagatgctacaccaggaaatctcttgacagggtttggattttttgagccttattggct |
118 |
Q |
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| T |
24414289 |
tcttctacctatgctgtggatgctttggatatgcagcttttggagatgctacaccaggaaatctcttgacagggtttggattttttgagccttattggct |
24414388 |
T |
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| Q |
119 |
tattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtacttatcttaccaatcgaaattcactagtaattcttcttttacaat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |
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| T |
24414389 |
tattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtactactcttaccaatcgaaattcactagtaattatttttttacaat |
24414488 |
T |
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| Q |
219 |
aaaatcttaccttttgatttatcataacttaaggtctttttgtattccctcatgtcaaattgatgaaacaattgtactcattagaaaaagtacaattatt |
318 |
Q |
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| T |
24414489 |
aaaatcataccttttgatttatcataacttaaggtctttttgtattccctcatgtcaaattgatgaaacaattgtactcatcagaaaaagtacaattatt |
24414588 |
T |
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| Q |
319 |
tgcaacatgcaatctttgtagcaccgacacttctatttgaaagtgtgtttgatgtcc |
375 |
Q |
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| T |
24414589 |
tgcaacatgcaatctttgtagcaccgacacttctatttgaaaatgtgtttgatgtcc |
24414645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 24419672 - 24419516
Alignment:
| Q |
19 |
tcttctacctatgttgtggttgctttggatatgcagcttttggagatgctacaccaggaaatctcttgacagggtttggattttttgagccttattggct |
118 |
Q |
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| T |
24419672 |
tcttctacctatgctgtggatgctttggatatgcagcttttggagatgctacaccaggaaatctcttgacagggtttggattttttgagccttattggct |
24419573 |
T |
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| Q |
119 |
tattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtact |
175 |
Q |
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| T |
24419572 |
tattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtact |
24419516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 24379232 - 24379401
Alignment:
| Q |
19 |
tcttctacctatgttgtggttgctttggatatgcagcttttggagatgctacaccaggaaatctcttgacagggtttggattttttgagccttattggct |
118 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
24379232 |
tcttctacatatgttgtggaggctttggatatgcagcttttggaaatgctacaccaggaaatctcttgacagggtttgggttttatgagccttactggct |
24379331 |
T |
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| Q |
119 |
tattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtacttatcttaccaatc |
188 |
Q |
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| T |
24379332 |
tattgaccttgccaatgtttgcattatcattcatttggttggaggatatcaggtactactcttaccaatc |
24379401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 24402036 - 24402192
Alignment:
| Q |
19 |
tcttctacctatgttgtggttgctttggatatgcagcttttggagatgctacaccaggaaatctcttgacagggtttggattttttgagccttattggct |
118 |
Q |
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|||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
24402036 |
tcttctacatatgttgcggaggctttggatatgcatcttttggagatgctacaccaggaaatctcttgacagggtttggtttttatgagccttactggct |
24402135 |
T |
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| Q |
119 |
tattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtact |
175 |
Q |
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| T |
24402136 |
tgttgacattgccaatgtttgcattatggttcatttggttggaggttatcaggtact |
24402192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 42362447 - 42362601
Alignment:
| Q |
19 |
tcttctacctatgttgtggttgctttggatatgcagcttttggagatgctacaccaggaaatctcttgacagggtttggattttttgagccttattggct |
118 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||| || || |||||||| ||||||||||| |||||||||| ||| || |||||||| |
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| T |
42362447 |
tcttctacctatgttgtgcatgcttcggatatgcagcttttggaaatcaaactccaggaaacctcttgacaggttttggattttatgaaccatattggct |
42362546 |
T |
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| Q |
119 |
tattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggta |
173 |
Q |
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| T |
42362547 |
cattgactttgctaatgcttgcattgttcttcatttggtgggaggatatcaggta |
42362601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 42720825 - 42720784
Alignment:
| Q |
335 |
tgtagcaccgacacttctatttgaaagtgtgtttgatgtcca |
376 |
Q |
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| T |
42720825 |
tgtagcaccgacacttctaattgaatgtatgtttgatgtcca |
42720784 |
T |
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