View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10315_low_2 (Length: 342)
Name: NF10315_low_2
Description: NF10315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10315_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 24414720 - 24415027
Alignment:
| Q |
18 |
ttttttcaagttattaatattgttgaagtgtcagcattagggtagtgtatgtgttccattgcttcatagcattcagttgagtagccgacctcactaaaat |
117 |
Q |
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| T |
24414720 |
ttttttcaagttattaatattgttgaagtgtcagcattagggtagtgtatgtgtgccattgcttcatagcattcagttgagtagccgacctcactaaaat |
24414819 |
T |
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| Q |
118 |
tattaaataaatgggacnnnnnnngcactaaataaataacttcagaagagacatacttggaacatagttctactgtcatctgacataaacatgtgcagtt |
217 |
Q |
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| T |
24414820 |
tattaaataaatgggacaagaaaagcactaaataaataacttcagaagag-----------acatagttctactgtcatctgacataaacatgtgcagtt |
24414908 |
T |
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| Q |
218 |
atatacaaaaaccaacctatgctgtgctttcttatttgtaattatgc----nnnnnnnncagtgtggatttgattttagtttagtttacattacttatat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24414909 |
atatacaaaaaccaacctatgctgtgctttcttatttgtaattatgcaaaaaaaaaaaacagtgtggatttgattttagtttagtttacattacttatat |
24415008 |
T |
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| Q |
314 |
actgacatttatgcctatg |
332 |
Q |
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||||||||||||||||||| |
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| T |
24415009 |
actgacatttatgcctatg |
24415027 |
T |
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