View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10316_high_2 (Length: 532)
Name: NF10316_high_2
Description: NF10316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10316_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 3082463 - 3081949
Alignment:
| Q |
1 |
attggttatgtttggattcccataaggtgatccaccacgttcaagcaccaaaaccctatgattttgggacagtgttgcagccaaaggacaccctgcagtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3082463 |
attggttatgtttggattcccataaggtgatccaccacgttcaagcaccaaaaccctatgattttgggacagtgttgcagccaaaggacaccctgcggtg |
3082364 |
T |
|
| Q |
101 |
ccaccaccaattatgatgtaatcatagaaggatatgattggtgctgaagttgcatcttgcataaaactgtattttctacctgtatctgtatataatcatg |
200 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082363 |
ccaccaccaactatgatgtaatcatagtaggatatgattggtgctgaagttgcatcttgcataaaactgtattttctacctgtatctgtatataatcatg |
3082264 |
T |
|
| Q |
201 |
annnnnnnnn--agttttacaccttttccaattgctagcaacatttacttattggtaaataaaataaaacgttaggtaattttctataggttgattaaaa |
298 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3082263 |
attttttttattagttttacaccttttccaattgctagcaacatttacttattggtaaataaaataaaaccttaggtaattttctataggttgattaaaa |
3082164 |
T |
|
| Q |
299 |
tagggttggtttgtctgtctcgtagttcatatagtaaaatattgcagggatatttactacgtgggttagggttcaaacttgcaatatctctcttccgcca |
398 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082163 |
tagggttggtttgtttgtctcgtagttcatatagtaaaatatggaagggatatttactacgtgggttagggttcaaacttgcaatatctctcttccgcca |
3082064 |
T |
|
| Q |
399 |
ctaagctttttgaaataaacctctttattttggtggggaatagtaaattactttgagaaaatatacatcagcttcacatgctgatattatcatggtaagt |
498 |
Q |
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| T |
3082063 |
ctaagctttttgaaataaacctctttattttggtggggaatagtaaattactttgagaaaatatacatcagcttcacatgctgatattatcatggtaagt |
3081964 |
T |
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| Q |
499 |
tctacatattttaag |
513 |
Q |
| |
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||||||||||||||| |
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| T |
3081963 |
tctacatattttaag |
3081949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 3090819 - 3090505
Alignment:
| Q |
1 |
attggttatgtttggattcccataaggtgatccaccacgttcaagcaccaaaaccctatgattttgggacagtgttgcagccaaaggacaccctgcagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3090819 |
attggttatgtttggattcccataaggtgatccaccacgttcaagcaccaaaaccctatgatttttggacagtgttgcagccaaaggacaccctgcagtg |
3090720 |
T |
|
| Q |
101 |
ccaccaccaattatgatgtaatcatagaaggatatgattggtgctgaagttgcatcttgcataaaactgtattttctacctgtatctgtatataatcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3090719 |
ccaccaccaattatgatgtaatcatagaaggatatgattggtgctgaagttgcatcttgcataaaactgtattttctacctgtatctgtatataatcatg |
3090620 |
T |
|
| Q |
201 |
a--nnnnnnnnnagttttacaccttttccaattgctagcaacatttacttattggtaaataaaataaaacgttaggtaattttctataggttgattaaaa |
298 |
Q |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| | |
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| T |
3090619 |
attttttttattagttttacaccttttccaattgctagcaacatttatttattggtaaataaaataaaaccctaggtaatgttctataggttgattaata |
3090520 |
T |
|
| Q |
299 |
tagggttggtttgtc |
313 |
Q |
| |
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|| | |||||||||| |
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| T |
3090519 |
tatgtttggtttgtc |
3090505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 5499501 - 5499448
Alignment:
| Q |
73 |
tgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcata |
126 |
Q |
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||||||||| ||||||||||||||||| ||||| || | ||| ||||||||||| |
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| T |
5499501 |
tgttgcagctaaaggacaccctgcagttccacctcccactattatgtaatcata |
5499448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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