View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10316_high_4 (Length: 254)
Name: NF10316_high_4
Description: NF10316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10316_high_4 |
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| [»] chr4 (4 HSPs) |
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| [»] chr5 (5 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 47731991 - 47731751
Alignment:
| Q |
14 |
cagagataaaaatgaagtattgaaaaatgtagacaaaccaatacatatccattcaatccaaacagggctcttgaagtatctcaatctttgtctctcttaa |
113 |
Q |
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| T |
47731991 |
cagagataaaaatgaagtattgaaaaatgtagacaaaccaatacatatccactcaatccaaacagggctcttgaagtatctttatctttgtctctcttaa |
47731892 |
T |
|
| Q |
114 |
ctgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaa |
213 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47731891 |
ctgttttatgtcttggattaaaacaacataagcatgaaacctcattgggaaaccattgaggatgttgatacaatgaagagaatcagagtagcaaacaaaa |
47731792 |
T |
|
| Q |
214 |
ttagtaatacccatttctttggccaacaggagacccttata |
254 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |
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| T |
47731791 |
ttagtaatacccatttctttggccaacatgagacccttata |
47731751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 119 - 254
Target Start/End: Original strand, 50822894 - 50823029
Alignment:
| Q |
119 |
ttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagt |
218 |
Q |
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|||| ||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||||| || | ||| || |||||||||||||||| ||| |
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| T |
50822894 |
ttatgtcttgaattaaaacaacataagcatgaaacctcattgggggaccattgaggatgttgatacagtgtaaagagtcagagtagcaaacaaaatcagt |
50822993 |
T |
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| Q |
219 |
aatacccatttctttggccaacaggagacccttata |
254 |
Q |
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| T |
50822994 |
aatactcatttctttggccaacaagagacccttata |
50823029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 111 - 254
Target Start/End: Original strand, 26333912 - 26334055
Alignment:
| Q |
111 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca |
210 |
Q |
| |
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||||| |||||| ||||| ||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||| | |||||| |||||| ||||| |
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| T |
26333912 |
taactcttttatgtcttgaattaaaacaacataagcatgtaacctcattggggggccattaaggatgttgatataatgtaaagaatcagagtagaaaaca |
26334011 |
T |
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| Q |
211 |
aaattagtaatacccatttctttggccaacaggagacccttata |
254 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
26334012 |
aaattagtaatacccatttctttggccaacaagatacccttata |
26334055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 11376216 - 11376346
Alignment:
| Q |
117 |
ttttatctcttggattaaaacaa-cataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatt |
215 |
Q |
| |
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|||||| |||||||||| ||||| ||||||||| ||||||||||| ||| ||||| |||||||||| | |||||| |||||||||||||||| |
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| T |
11376216 |
ttttatgtcttggattagaacaaacataagcatgaaacctcatta--------ttggggatggtgatacaatgtaaagaatcagagtagcaaacaaaatc |
11376307 |
T |
|
| Q |
216 |
agtaatacccatttctttggccaacaggagacccttata |
254 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
11376308 |
agtaatacccatttctttggccaacaaaagacccttata |
11376346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 111 - 254
Target Start/End: Original strand, 11052044 - 11052187
Alignment:
| Q |
111 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca |
210 |
Q |
| |
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||||| |||||| ||||| ||||| ||||||||| ||| ||||||| || || ||||||||||||||||||||||||| | |||||| |||||||||||| |
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| T |
11052044 |
taactcttttatatcttgaattaatacaacataaacattaaacctcgttggggaaccattgaggatgttgatacaatgtaaagaatcagagtagcaaaca |
11052143 |
T |
|
| Q |
211 |
aaattagtaatacccatttctttggccaacaggagacccttata |
254 |
Q |
| |
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|||| ||||||||| |||||||||||||||| |||||||||||| |
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| T |
11052144 |
aaatcagtaatacctatttctttggccaacaagagacccttata |
11052187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 24874147 - 24874061
Alignment:
| Q |
168 |
attgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttata |
254 |
Q |
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||||| ||||||||||||||| | |||||| || ||||||||||||| |||||||||||||||||| ||||||| |||||||||||| |
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| T |
24874147 |
attgaagatgttgatacaatgtaaagaatcagaatagcaaacaaaatcagtaatacccatttctttagccaacaagagacccttata |
24874061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 238
Target Start/End: Complemental strand, 11106874 - 11106747
Alignment:
| Q |
111 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca |
210 |
Q |
| |
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||||| |||||| ||||| || |||||| ||||| ||| ||||||||| ||| |||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
11106874 |
taactcttttatatcttgaatcaaaacagcataaacatgaaacctcatgaggggaccattaaggatgttgatacaatgaagagaattagagtagcaaaat |
11106775 |
T |
|
| Q |
211 |
aaattagtaatacccatttctttggcca |
238 |
Q |
| |
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|||| || | ||||||| | |||||||| |
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| T |
11106774 |
aaatcagaattacccatgtttttggcca |
11106747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 30987203 - 30987097
Alignment:
| Q |
117 |
ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatta |
216 |
Q |
| |
|
|||||| ||||| || |||||||||||| ||| | ||||| | || | |||| ||||||||||||||||||||| |||| ||||||||||| |||| | |
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|
| T |
30987203 |
ttttatatcttgaatcaaaacaacataaacatgatacctcctggggggatcattaaggatgttgatacaatgaagaaaatcagagtagcaaactaaatca |
30987104 |
T |
|
| Q |
217 |
gtaatac |
223 |
Q |
| |
|
|||||| |
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|
| T |
30987103 |
ttaatac |
30987097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 4913900 - 4913977
Alignment:
| Q |
177 |
gttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttata |
254 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||||||||| | |||||||||||||| ||||| | |||||| ||||| |
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|
| T |
4913900 |
gttgatgcaaagaagagaattcgagtagcaaacaaaatcatcgatacccatttctttagccaatatgagaccattata |
4913977 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 111 - 254
Target Start/End: Original strand, 43706607 - 43706750
Alignment:
| Q |
111 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca |
210 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||| ||| |||||||||| || ||||| ||||||||||| |||||| | ||| || ||||| |||||| |
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|
| T |
43706607 |
taactattttatgtcttggattaaaacggcataaacatgaaacctcattgggggaccatggaggatgttgagacaatgtaaagagtcagagtaacaaaca |
43706706 |
T |
|
| Q |
211 |
aaattagtaatacccatttctttggccaacaggagacccttata |
254 |
Q |
| |
|
|||| |||||| || |||||||||||||||| |||||||||||| |
|
|
| T |
43706707 |
aaatcagtaatgcctatttctttggccaacaagagacccttata |
43706750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 9083023 - 9083161
Alignment:
| Q |
117 |
ttttatctcttggattaaaacaacataagcataaaacctcattaggaa-accattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatt |
215 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||| | || ||| |||||||||||||||| |
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|
| T |
9083023 |
ttttatatcttggattaaaacagaataagcatgaaacctcattggggggaccattgaggatgttgatacaatgtaaagcatcagagtagcaaacaaaatc |
9083122 |
T |
|
| Q |
216 |
agtaatacccatttctttggccaacaggagacccttata |
254 |
Q |
| |
|
| ||||||||| | ||||||||||| |||||| ||||| |
|
|
| T |
9083123 |
aagaatacccatatatttggccaacaagagacctttata |
9083161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 12734595 - 12734486
Alignment:
| Q |
117 |
ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatta |
216 |
Q |
| |
|
|||||| ||||| || |||||| ||||| ||| ||||||||| || | ||||| |||||||||||||||||||||||||| ||||||||||| |||| | |
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|
| T |
12734595 |
ttttatatcttgaatcaaaacagcataaacatgaaacctcatggggga-ccattaaggatgttgatacaatgaagagaatcagagtagcaaactaaatca |
12734497 |
T |
|
| Q |
217 |
gtaatacccat |
227 |
Q |
| |
|
| ||||||||| |
|
|
| T |
12734496 |
gaaatacccat |
12734486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 17654871 - 17654961
Alignment:
| Q |
117 |
ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaa |
208 |
Q |
| |
|
|||||| ||||| || |||||| ||||| || |||||||||| |||| ||||| |||||||||||||||| ||||||||| |||||||||| |
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|
| T |
17654871 |
ttttatatcttgaatcaaaacagcataaagatgaaacctcatttggaa-ccattaaggatgttgatacaataaagagaatcagagtagcaaa |
17654961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 41430547 - 41430633
Alignment:
| Q |
111 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatc |
197 |
Q |
| |
|
||||| |||||| ||||| || ||||| ||||| ||||||||||||| | |||||| | |||||||||||||||||||||||| |
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|
| T |
41430547 |
taactcttttatatcttgaatcgaaacatcataaacataaaacctcatggagggaccattaaagatgttgatacaatgaagagaatc |
41430633 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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