View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10316_high_5 (Length: 251)
Name: NF10316_high_5
Description: NF10316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10316_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 47731769 - 47731527
Alignment:
| Q |
1 |
ccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatcca-----gaaaagcctgataagtaaaaaacc |
95 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| |||||||||||| || ||||||||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
47731769 |
ccaacatgagacccttatagatgacataaagctcaacgtacaagatatcaagtaaattttagatgtatccaatccagtaaagcctgataag-aaaaaacc |
47731671 |
T |
|
| Q |
96 |
tgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47731670 |
tgcatcatttcttaaaattcctccataacctgctcttataggagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgttgttc |
47731571 |
T |
|
| Q |
196 |
catttgatgaattgggcttcatgagtagtactagagatgaaagg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47731570 |
catttgatgaattgggcttcatgagtagtactagagatgaaagg |
47731527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 50823011 - 50823246
Alignment:
| Q |
1 |
ccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcat |
100 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| ||| |||||||||| || |||||||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
50823011 |
ccaacaagagacccttatagatggcataaagctcatcatacaagat--caaatgaattttgaatgtatccagaaaagcctgacaagtaaaa-acctgcat |
50823107 |
T |
|
| Q |
101 |
catttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccattt |
200 |
Q |
| |
|
||| |||||||||||||||||||| ||||| || |||||| ||||||||||||||||||||| || ||||||||||||||||||||| ||||||| || |
|
|
| T |
50823108 |
aattccttaaaattcctccataaccaactcttctaggagatccaaggcaacttccatcaacatttagaatgacacaagaatgattattgttgttccactt |
50823207 |
T |
|
| Q |
201 |
gatgaattgggcttcatgagtagtactagagatgaaagg |
239 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||| |
|
|
| T |
50823208 |
aatgaattggtcttcatcagtagtactagagatggaagg |
50823246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 11376336 - 11376553
Alignment:
| Q |
9 |
agacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttctt |
108 |
Q |
| |
|
||||||||||||||| |||| || ||| ||||||||||||||| |||||||| ||||||| |||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
11376336 |
agacccttatagatggcatagagctcagcatacaagatatcagatgaattttgaatgtatctagaaaagcctgacaag-aaaaaacctgcataatttctt |
11376434 |
T |
|
| Q |
109 |
aaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccatttgatgaatt |
208 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| ||||||||||| || |||| |||||||||| |
|
|
| T |
11376435 |
aaaattcttccataacctgctcttataggagatccaaggcaacttccatcaacattaacgatgacacaaaaatgattattgttgctccacttgatgaatt |
11376534 |
T |
|
| Q |
209 |
gggcttcatgagtagtact |
227 |
Q |
| |
|
| |||||| | ||||||| |
|
|
| T |
11376535 |
tgtcttcatcaatagtact |
11376553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26334037 - 26334274
Alignment:
| Q |
1 |
ccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcat |
100 |
Q |
| |
|
|||||| || ||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||| |||||||| |||| ||| ||||||||||||| |
|
|
| T |
26334037 |
ccaacaagatacccttatagatggcataaagcccaacatacaagatatcagatgaattttgaatgtacacagaaaagtctgacaag-aaaaaacctgcat |
26334135 |
T |
|
| Q |
101 |
catttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccattt |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||| || |||| ||| ||||||| || |
|
|
| T |
26334136 |
catttcttaaaattcctccataaccagctcttataagagatccaaggcaacttcaatcaacattacggatgacacaacaaagattgttgttgttccagtt |
26334235 |
T |
|
| Q |
201 |
gatgaattgggcttcatgagtagtactagagatgaaagg |
239 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||| |||| |
|
|
| T |
26334236 |
gatgaattggctttcatcggtagtattagagatggaagg |
26334274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 12271222 - 12271172
Alignment:
| Q |
63 |
atgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaatt |
114 |
Q |
| |
|
||||| |||||||||||||| ||| || |||||||||||||||||||||||| |
|
|
| T |
12271222 |
atgtagccagaaaagcctgacaag-aagaaacctgcatcatttcttaaaatt |
12271172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 11052169 - 11052375
Alignment:
| Q |
1 |
ccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcat |
100 |
Q |
| |
|
|||||| |||||||||||||||| |||| || ||||||||||||||||||| || ||||| ||||| | |||||||||||| ||| |||||| |||||| |
|
|
| T |
11052169 |
ccaacaagagacccttatagatggcatagagctcaacatacaagatatcagatggattttgaatgtacctagaaaagcctgacaag-aaaaaatctgcat |
11052267 |
T |
|
| Q |
101 |
catttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccattt |
200 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || |
|
|
| T |
11052268 |
catttcgtaaaattcctccataaccagctcttataggagatccaaggcaacttccatcaacattaaggatgtcacaagaatgattattgttgttccactt |
11052367 |
T |
|
| Q |
201 |
gatgaatt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
11052368 |
gatgaatt |
11052375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 24874079 - 24873864
Alignment:
| Q |
1 |
ccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcat |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||| ||||||||||||||| |||||||| ||||||||| |||| ||||| ||| ||||||||||||| |
|
|
| T |
24874079 |
ccaacaagagacccttatagatgacatagagttcggcatacaagatatcagatgaattttgaatgtatccataaaatcctgacaag-aaaaaacctgcat |
24873981 |
T |
|
| Q |
101 |
catttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccattt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| || || |||||| || |||||||||||||||||||||||||||||||| ||||||||| ||||||| || |
|
|
| T |
24873980 |
aatttcttaaaattcctccataactagctattgtaggagatccaatgcaacttccatcaacattaaggatgacacaagcatgattattattgttccactt |
24873881 |
T |
|
| Q |
201 |
gatgaattgggcttcat |
217 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
24873880 |
gatgaattggtcttcat |
24873864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 11106738 - 11106549
Alignment:
| Q |
12 |
cccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaa |
111 |
Q |
| |
|
|||| ||| ||| ||||||||||| || |||| |||| || ||||||| |||||| ||||| || || || ||||||||| | ||||| |||||||||| |
|
|
| T |
11106738 |
ccctgatatatggcataaagttcagcaaacaaaatattagaagaattttggatgtaaccagagaaacccgacaagtaaaaa-cttgcataatttcttaaa |
11106640 |
T |
|
| Q |
112 |
attcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccatttga |
202 |
Q |
| |
|
| |||||||||||| || ||| || |||||| | ||||||| ||||||||||||||||||||||| || |||||| |||||||||||| |
|
|
| T |
11106639 |
actcctccataaccggcccttgtaggagatcccaagcaacttaagtcaacattaaggatgacacaagagtggttattgttgttccatttga |
11106549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 30987028 - 30986943
Alignment:
| Q |
89 |
aaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgaca |
174 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| || | || |||| | | ||||||| | |||||||||||||||||| |
|
|
| T |
30987028 |
aaaaacctgcatcatttcttaaaactcctctataaccagcccacgtaggagagcccaagcaactttcgtcaacattaaggatgaca |
30986943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 18055682 - 18055614
Alignment:
| Q |
139 |
gatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccatttgatgaat |
207 |
Q |
| |
|
|||| ||| ||||| |||||||||||||| || |||||||| || ||||| ||||||| ||||||||| |
|
|
| T |
18055682 |
gatccaagacaactaccatcaacattaagaatcacacaagagtggttattattgttccacttgatgaat |
18055614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 43708934 - 43709148
Alignment:
| Q |
24 |
acataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcctccataa |
123 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||| ||||||| |||||| ||| | ||| |||||| ||||| |||||||||||||||||||||| |
|
|
| T |
43708934 |
acatagagctcaacatacaagatatcatttgaattttgaatgtatctagaaaatcctcacaag-aaaaaagatgcataatttcttaaaattcctccataa |
43709032 |
T |
|
| Q |
124 |
cctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccatttgatgaattgggcttcatgagtag |
223 |
Q |
| |
|
||| |||||||| |||||| || |||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||| ||||| |
|
|
| T |
43709033 |
cctactcttataggagatccaatacaacttccatcaacattaaggatgacacaaaaatgattattgttgttccgcttgatgaattggtcttcatcagtag |
43709132 |
T |
|
| Q |
224 |
tactagagatgaaagg |
239 |
Q |
| |
|
||||| ||||| |||| |
|
|
| T |
43709133 |
tactaaagatggaagg |
43709148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 174
Target Start/End: Original strand, 564570 - 564599
Alignment:
| Q |
145 |
aggcaacttccatcaacattaaggatgaca |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
564570 |
aggcaacttccatcaacattaaggatgaca |
564599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 9083143 - 9083348
Alignment:
| Q |
1 |
ccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcat |
100 |
Q |
| |
|
|||||| |||||| |||||||| |||| || ||| |||||||||| ||| |||||||| |||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
9083143 |
ccaacaagagacctttatagatagcatagagctcatcatacaagat--cagatgaattttgaatgtatccagaaaagcctaacaag-aaaaaacctgcat |
9083239 |
T |
|
| Q |
101 |
catttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccattt |
200 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||||||||| || |||| || |
|
|
| T |
9083240 |
agtttcttaaaattcctccatagccagctcttactggagatccaagacaacttccatcaacattaaggttgacacaagaatgattattgttggtccactt |
9083339 |
T |
|
| Q |
201 |
gatgaattg |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
9083340 |
gatgaattg |
9083348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 35532805 - 35532701
Alignment:
| Q |
17 |
atagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcc |
116 |
Q |
| |
|
|||||||||||| | ||||||||||| || |||| |||||| |||||||||||||||||||| |||| | | |||||||||||||||||||||||| |
|
|
| T |
35532805 |
atagatgacatataactcaacatacaaaatgtcagaagaatttggaatgtatccagaaaagcctgacaagt-agacacctgcatcatttcttaaaattcc |
35532707 |
T |
|
| Q |
117 |
tccata |
122 |
Q |
| |
|
||||| |
|
|
| T |
35532706 |
accata |
35532701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 28697269 - 28697161
Alignment:
| Q |
89 |
aaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattatt |
188 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||| || |||||||| |||| | | | ||||||| | ||||||| ||||| | ||| ||||||||||| |
|
|
| T |
28697269 |
aaaaacccgcatcatttcttaagaatcctccatagccaactcttatatgagagccacgacaacttctaccaacatttaggattaaacatgaatgattatt |
28697170 |
T |
|
| Q |
189 |
gctgttcca |
197 |
Q |
| |
|
| ||||||| |
|
|
| T |
28697169 |
gttgttcca |
28697161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 34295602 - 34295643
Alignment:
| Q |
91 |
aaacctgcatcatttcttaaaattcctccataacctgctctt |
132 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
34295602 |
aaacctgcatcatttcttaaaattccaccatagccagctctt |
34295643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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