View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10316_low_1 (Length: 640)
Name: NF10316_low_1
Description: NF10316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10316_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 581; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Original strand, 15152841 - 15153465
Alignment:
| Q |
1 |
caaagaggtatatttccatcggaggtgactttctcgaagcctagtcggagttctatacacttagaaaaggatgtcggaaacaaagatgtcgaggaaatgg |
100 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15152841 |
caaagaggtatatttccgtcggaggcgactttctcgaagcccagtcggagttctatacacttagaaaaggatgtcggaaacaaagatgtcgaggaaatgg |
15152940 |
T |
|
| Q |
101 |
ccaatggcctattttcaataccattaataaagaggataaatgttcattttttgtgtagcctattttcaatatacctaaactaccctcccataacgattaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
15152941 |
ccaatggcctattttcaataccattaataaagaggataaatgttcattttttgtgtagcctattttcaatatacctaaattaccctcccataacaattaa |
15153040 |
T |
|
| Q |
201 |
attatttttcaaatttaaatgttcatctacaccataactggaacttagttagcttcacgaaaaatatgatccacatagaagacatctagctacgcgagaa |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15153041 |
attatttttcaaatttaaattttcatctacactataactggaacttagttagcttcacgaaaaatatgatccacatagaagacgtctagctacgcgagaa |
15153140 |
T |
|
| Q |
301 |
tatcatggatgtgacgaaccatcaaataagagggacgtctaacattacacccgccatgaatcaaattcagtgcaacctttgaatcaaatttaatgtcaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15153141 |
tatcatggatgtgacgaaccatcaaataagagggacgtctaacattacacccgccaagaatcaaattcagtgcaacctttgaatcaaatttaatgtcaat |
15153240 |
T |
|
| Q |
401 |
atctctaaaacccaactttaaccccatgtaaatagtaatggagcaagcaagaagataattgaaccagcatagccaaaaatgaaaatttcagtacggtcac |
500 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15153241 |
atctctaaaactcaactttaaccccatgtaaatagtaatggagcaagcaagaagatagttgaaccagcatagccaaaaatgaaaatttcagtacggtcac |
15153340 |
T |
|
| Q |
501 |
caacactccttaacaagcagcaatggcaccatggttggttcctttaatttgttctttttctcttgaaaggtttacaaaatctatctcaaatatagttaaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15153341 |
caacactccttaacaagcagcaatggcaccatggttggttcctttaatttgttctttttctcttgaaaggtttacaaaatctatctcaaatatagttaaa |
15153440 |
T |
|
| Q |
601 |
taacatttatatgctcagtgaaatt |
625 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
15153441 |
taacatttatatgctcagtgaaatt |
15153465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 246 - 407
Target Start/End: Original strand, 15148567 - 15148727
Alignment:
| Q |
246 |
tagttagcttcacgaaaaatatgatccacatagaagacatctagctacgcgagaatatcatggatgtgacgaaccatcaaataagagggacgtctaacat |
345 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| |||| || | | ||| |||||||||| || | |||||||||||||||| ||||||| ||| |||| |
|
|
| T |
15148567 |
tagttagcttcacgaaaaatatgatcta-atagtagacgtccaacaacgtgagaatatcaagggtttgacgaaccatcaaattagagggatatctcacat |
15148665 |
T |
|
| Q |
346 |
tacacccgccatgaatcaaattcagtgcaacctttgaatcaaatttaatgtcaatatctcta |
407 |
Q |
| |
|
|| |||| || |||||||||||| ||||||| || ||||| ||| || |||||||||||| |
|
|
| T |
15148666 |
tagacccatcaagaatcaaattcaatgcaaccatttaatcagattcaacatcaatatctcta |
15148727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University