View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10316_low_10 (Length: 240)
Name: NF10316_low_10
Description: NF10316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10316_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 10359301 - 10359101
Alignment:
| Q |
1 |
tttgattttgaacatgatcttgtagaaaaaagtttgtgaaaatttaataaaagataaaaattacataacctaccttatttttt-attttggattaccaac |
99 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10359301 |
tttgattttgaacataatcttgtagaaaaaagtttgtgaaaatttaatacaagataaaaattacataacctaccttatttttttattttggattaccaac |
10359202 |
T |
|
| Q |
100 |
gctccttaattaagatatacaactgttaataaattagtaggtatgttagtttttaagatttgaaccttggacatcattcttgtactattatatacgagtt |
199 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10359201 |
gctccttatttaagatatacaaatgttaataagttagtagttatgttagtttttaagatttgaaccttggacatcattcttgtactattatatacgagtt |
10359102 |
T |
|
| Q |
200 |
a |
200 |
Q |
| |
|
| |
|
|
| T |
10359101 |
a |
10359101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 29258027 - 29257974
Alignment:
| Q |
113 |
gatatacaactgttaataaattagtaggtatgttagtttttaagatttgaacct |
166 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||||||| ||| | ||||||||| |
|
|
| T |
29258027 |
gatagacaattgttaataaattagtagttatgttagttcttagggtttgaacct |
29257974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University