View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10316_low_12 (Length: 217)
Name: NF10316_low_12
Description: NF10316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10316_low_12 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 1163317 - 1163116
Alignment:
| Q |
16 |
tgtttatgtttattccgataacaagaacaacttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgttgatc |
115 |
Q |
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| T |
1163317 |
tgtttatgtttattccgataacaagaacaacttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgttgatc |
1163218 |
T |
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| Q |
116 |
gtgcttcccaaaccatgcctgtcattatattcggcatataaagttcctttcaccatttactttcctgtcttccatgcatgtgttacactaggaatcttac |
215 |
Q |
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| T |
1163217 |
gtgcttcccaaaccatgcctgtcattatattcggcatataaagttcctttcaccatttactttcctgtcttccatgcatgtgttacactaggaatcttac |
1163118 |
T |
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| Q |
216 |
ag |
217 |
Q |
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|| |
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| T |
1163117 |
ag |
1163116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 40418824 - 40418950
Alignment:
| Q |
56 |
tgcaatttgcaatttctgtttgatatttatgtttatt---------agaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatatt |
146 |
Q |
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| T |
40418824 |
tgcagtttgcaatttctgtttgatatttatgtttattccgattacaagaacaagttacgtgtgttgatcgtgcttcacaaaccatgcctgtcattatatt |
40418923 |
T |
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| Q |
147 |
cggcatataaagttcctttcaccattt |
173 |
Q |
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| T |
40418924 |
cggcataaaaagttcctttcaccattt |
40418950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 3300024 - 3300147
Alignment:
| Q |
45 |
acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtc----at |
140 |
Q |
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| T |
3300024 |
acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgt---------gtgcttcccaaaccatgcatgtcattaat |
3300114 |
T |
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| Q |
141 |
tatattcggcatataaagttcctttcaccattt |
173 |
Q |
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| T |
3300115 |
tatattcggcatataaagtacctttcaccattt |
3300147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 3392917 - 3393040
Alignment:
| Q |
45 |
acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtc----at |
140 |
Q |
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| T |
3392917 |
acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgt---------gtgcttcccaaaccatgcatgtcattaat |
3393007 |
T |
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| Q |
141 |
tatattcggcatataaagttcctttcaccattt |
173 |
Q |
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| T |
3393008 |
tatattcggcatataaagtacctttcaccattt |
3393040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 1850390 - 1850444
Alignment:
| Q |
45 |
acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaa |
99 |
Q |
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| T |
1850390 |
acttactttgttgcaatttacaatttctgtttgatatttatgtttattagaacaa |
1850444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 38988246 - 38988336
Alignment:
| Q |
56 |
tgcaatttgcaatttctgtttgatatttatgtttatt---------agaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgt |
137 |
Q |
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| T |
38988246 |
tgcagtttgcaatttctgtttgatatttatgtttattccgattacaagaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgt |
38988336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 39880369 - 39880495
Alignment:
| Q |
56 |
tgcaatttgcaatttctgtttgatatttatgtttatt---------agaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatatt |
146 |
Q |
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| T |
39880369 |
tgcagtttgcaatttctgtttgatatttatgtttattccgatcacaagaatatgttccgtgtgttgatcttgcttcccaaaacatgtctgtcaatatatt |
39880468 |
T |
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| Q |
147 |
cggcatataaagttcctttcaccattt |
173 |
Q |
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| T |
39880469 |
cggcataaaaagttactttcaccattt |
39880495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 25911821 - 25911695
Alignment:
| Q |
56 |
tgcaatttgcaatttctgtttgatatttatgtttatt---------agaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatatt |
146 |
Q |
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| T |
25911821 |
tgcagtttgcaatttctgtttgatacttatgtttattccgattacaagaacaagttacgtgtgttgatcatgcttcccaaaccatgtctgtcattatatt |
25911722 |
T |
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| Q |
147 |
cggcatataaagttcctttcaccattt |
173 |
Q |
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| T |
25911721 |
cggcataaaaaattcctttcactattt |
25911695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 44444272 - 44444207
Alignment:
| Q |
93 |
agaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatattcggcatataaag |
158 |
Q |
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| T |
44444272 |
agaacaagttacgtgtgttactcgtgcttcccaaaccatgcgagtcataatattcgaaatataaag |
44444207 |
T |
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