View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10316_low_3 (Length: 290)
Name: NF10316_low_3
Description: NF10316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10316_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 41284011 - 41284284
Alignment:
| Q |
11 |
cataggtcacatctctttatgtgaatatcattttcaaagtatatgtcttgtattgatttcatccaatacgaaaatggatactaacgagagtgttaaaaag |
110 |
Q |
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| T |
41284011 |
cataggtcacacctctttatatggatatcattttcaaagtatatgtcttgtattgatttcatccaatacgaaaatagatgctaacgagagtgttaaaaag |
41284110 |
T |
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| Q |
111 |
ataatgttgctagca---ctcc------atgtaatatgtaagacaatattcttgtagcatttgtcgtccttgagactcttacctaactaagtcatattca |
201 |
Q |
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| T |
41284111 |
atagtgttgctagcagtactcctcgtatatgtaatatgtaagacaatattcttatatcatttgacatccttgagactcttacctaactaagtcatattca |
41284210 |
T |
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| Q |
202 |
aaccattattaaaatgaaaaatcacaagtctt-aattggtgtgtgcttatgctgattgttagtggcattggatt |
274 |
Q |
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| T |
41284211 |
aaccattattaaaatgaaaaatcacaagtcttaaattggtgtgtgcttatgctggttgttagtggcattggatt |
41284284 |
T |
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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 46413404 - 46413314
Alignment:
| Q |
184 |
ctaactaagtcatattcaaaccattattaaaatgaaaaatcacaagtcttaattggtgtgtgcttatgctgattgttagtggcattggatt |
274 |
Q |
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| T |
46413404 |
ctaactaagtcatatacaaaacattattaaaatgaaaaatcacaggtcttaaatggtgtgtgcatgtgctggttgttagtggcattggatt |
46413314 |
T |
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