View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_high_1 (Length: 635)
Name: NF10317_high_1
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 19 - 618
Target Start/End: Original strand, 31870685 - 31871294
Alignment:
| Q |
19 |
catcaaacttattgaacttgtttgaataatttgtgtcaaaatagtcatatattgcattcttgattatcccaagagggtgttgatccctcctgtgaagctg |
118 |
Q |
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| T |
31870685 |
catcaaacttattgaacttgtttgaataatttgtgtcaaaatagtcatatattgcattcttgattatcccaagagggtgttgatccctcctgtgaagctg |
31870784 |
T |
|
| Q |
119 |
cattccaagttttgaaaatatgttgtctggaacattatttgttggatcgtcgtccttcactacatctaaaagaccaagaagcacaatatattagacatta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31870785 |
cattccaagttttgaaaatatgttgtctggaacattatttgttggatcgtcgtccttcactacatctaaaagaccaagaagcacaatatattacacatta |
31870884 |
T |
|
| Q |
219 |
aaacccgagattaattttcatctactatcagtgtaannnnnnnaacattttcaac----------caatcatatatgtgactttaacaatagttatgatt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31870885 |
aaacccgagattaattttcatctactatcagtgtaatttttttaacattttcaacaaatcacaaccaatcatatatgtgactttaacaatagttatgatt |
31870984 |
T |
|
| Q |
309 |
aaagtaaaatcttatgaatgatatgcagattatgattgattgccagggtaaaaaatatttacaccaacaacaatgtatataaattaaatccttaaacatt |
408 |
Q |
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| T |
31870985 |
aaagtaaaatcttatgaatgatatgcagattatgattgattgcgagggtaaaaaatatttacaccaacaacaatgtatataaattaaatccttaaacatt |
31871084 |
T |
|
| Q |
409 |
gtgaaccaagccaacaaaaccaaaccgaagtgaagtaccttgtcttgtaatcttgactccaccatactccaatgcagagagaactggctgctgcctcgat |
508 |
Q |
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| T |
31871085 |
gtgaaccaagccaacaaaaccaaaccgaagtgaagtaccttgtcttgtaatcttgactccaccatactccaatgcagagagaactggctgctgcctcgat |
31871184 |
T |
|
| Q |
509 |
ttcttgcgggaaaggttgttggcagagagagaggcagcagatgatgagaaaggtaaacaaaattttaagctccttaggctattattactttgacgaaata |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31871185 |
ttcttgcgggaaaggttgttggcagagagagaggcagcagatgatgagaaaggtaaacaaaattttaagctccttaggctattattactttgacgaaata |
31871284 |
T |
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| Q |
609 |
gcgaaagtgt |
618 |
Q |
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|||||||||| |
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| T |
31871285 |
gcgaaagtgt |
31871294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 18141177 - 18141234
Alignment:
| Q |
101 |
atccctcctgtgaagctgcattccaagttttgaaaatatgttgtctggaacattattt |
158 |
Q |
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| T |
18141177 |
atccctcatgtaaagctgcgttccaagttttgaaaatatattgtctggaacattattt |
18141234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 18141115 - 18141181
Alignment:
| Q |
21 |
tcaaacttattgaacttgtttgaataatttgtgtcaaaatagtcatatattgcattcttgattatccc |
88 |
Q |
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|||||||| |||||||| ||||||| |||||||||||||||| |||||||||||||| | |||||| |
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| T |
18141115 |
tcaaacttgttgaacttaattgaatagtttgtgtcaaaatagt-gtatattgcattcttcaatatccc |
18141181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 373
Target Start/End: Complemental strand, 35341595 - 35341500
Alignment:
| Q |
274 |
caatcatatatgtgactttaacaatagttatgattaaagtaaaatcttatgaatgatatgcagattatgattgattgccagggtaaaaaatatttacacc |
373 |
Q |
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|||| |||||||| ||||||| |||||||||||||||||| |||| || | |||||| || ||||||||||||| || |||||| || |||||||| |
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| T |
35341595 |
caattatatatgtcactttaaaaatagttatgattaaagttaaatgtttttaatgatctg----ttatgattgattgacaatgtaaaagatctttacacc |
35341500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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