View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_high_10 (Length: 406)
Name: NF10317_high_10
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 52260668 - 52260287
Alignment:
| Q |
17 |
aaaaaagagatacaaaattatacactcaattgtatgagaaaatgctataagctactgaaaaagtgctacaagctaaagtttgtgagagaataatcattac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52260668 |
aaaaaagagatacaaaattatacactcaattgtatgagaaaatgctataagctactgaaaaagtgctacaagctaaagtttgtgagagaataatcattac |
52260569 |
T |
|
| Q |
117 |
caaattagtcatacaaacttatacattataaattatctaaatcctaagatttactacttattttaatttaaag---tagagaaggaataccagctttatc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52260568 |
caaattagtcatacaaacttatacattataaattatctaaatcctaagatttactacttattttaatttaaagaagtagagaaggaataccagctttatc |
52260469 |
T |
|
| Q |
214 |
aaggattgctttgagcttagaaacatctcggattgcaatgcaagtgtgacgatctcgaccaccatgttgaggtcttccagttaaagggtcaggatttgga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52260468 |
aaggattgctttgagcttagaaacatctcggattgcaatgcaagtgtgacgatctcgaccaccatgttgaggtcttccagttaaagggtcaggatttgga |
52260369 |
T |
|
| Q |
314 |
agttccatcaagtgaatcatctcagaccctacccacaaccaagtacccctgtatggaagcttatcatgaggccttgcttcat |
395 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52260368 |
agttccatcaagtgaatcatctcagaccctacccacaaccaagtacccctgtatggaagcttatcatgaggccttgcttcat |
52260287 |
T |
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