View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10317_high_16 (Length: 371)

Name: NF10317_high_16
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10317_high_16
NF10317_high_16
[»] chr1 (4 HSPs)
chr1 (2-83)||(23786345-23786426)
chr1 (82-128)||(23786282-23786328)
chr1 (172-237)||(24621923-24621983)
chr1 (295-342)||(14292770-14292817)
[»] chr2 (1 HSPs)
chr2 (234-335)||(23876722-23876825)
[»] chr5 (1 HSPs)
chr5 (240-335)||(5527854-5527951)
[»] chr3 (2 HSPs)
chr3 (242-335)||(7325-7420)
chr3 (238-335)||(3797971-3798070)
[»] chr4 (2 HSPs)
chr4 (246-287)||(44722759-44722800)
chr4 (295-335)||(50115308-50115348)
[»] chr7 (1 HSPs)
chr7 (295-335)||(46152137-46152177)


Alignment Details
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 23786426 - 23786345
Alignment:
Q  2 tgagaagaatgacgaaacaaaacgaggaatcttgttcttgttgttggtgggaataatagaagaaacagcagcagcaccagca 83  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  23786426 tgagaaggatgacgaaacaaaacgaggaatcttgttcttgttgttggtgggaataatagaacaaacagcagcagcagcagca 23786345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 23786328 - 23786282
Alignment:
Q  82 caccaccaccaccatatgatcttcttaaaattgaaaacattgttgca 128  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  23786328 caccaccaccaccatataatcttcttaaaattgaaaacattgttgca 23786282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 24621923 - 24621983
Alignment:
Q  172 agggaaccagcgatcttatttatatctagggataagaaggttaaacaaatttactaacttatttat 237  Q
    ||||||||||||||||||||||||||||||     || ||||||||||||||||||||||||||||    
T  24621923 agggaaccagcgatcttatttatatctagg-----gagggttaaacaaatttactaacttatttat 24621983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 14292817 - 14292770
Alignment:
Q  295 cattggattagatatgtggtccagattaaacataaggaacaaaaacat 342  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  14292817 cattggattagatatgtggtccatattaaacataaggaacacaaacat 14292770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 23876722 - 23876825
Alignment:
Q  234 ttatggtgacggctaggatgaggtagctaataggtccctcactagtgagggagtnnnnnnn--cattggattagatatgtggtccagattaaacataagg 331  Q
    |||||||| ||||||||||||||||| | |||||||||||||| |||||| |||         ||||||||||||||||||||| |||||||||||||||    
T  23876722 ttatggtggcggctaggatgaggtagttgataggtccctcactggtgaggtagtaaaaaataccattggattagatatgtggtctagattaaacataagg 23876821  T
Q  332 aaca 335  Q
    ||||    
T  23876822 aaca 23876825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 5527951 - 5527854
Alignment:
Q  240 tgacggctaggatgaggtagctaataggtccctcactagtgagggagt--nnnnnnncattggattagatatgtggtccagattaaacataaggaaca 335  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||         |||||||||| |||||||||| |||||||||||||||||||    
T  5527951 tgacggctaggatgaggtagctaataggtccctcaccgatgagggagtaaaaaatatcattggattaaatatgtggtctagattaaacataaggaaca 5527854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 335
Target Start/End: Complemental strand, 7420 - 7325
Alignment:
Q  242 acggctaggatgaggtagctaataggtccctcactagtgagggagtnnnnnnn--cattggattagatatgtggtccagattaaacataaggaaca 335  Q
    |||||||||||||||||||||||||||| ||||||  ||| |||||         ||||||||||||||||||||| ||||||||||||| |||||    
T  7420 acggctaggatgaggtagctaataggtctctcactgatgatggagtaaaaaatatcattggattagatatgtggtctagattaaacataaagaaca 7325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 3798070 - 3797971
Alignment:
Q  238 ggtgacggctaggatgaggtagctaataggtccctcactagtgagggagtnnnnnnn--cattggattagatatgtggtccagattaaacataaggaaca 335  Q
    ||||||||||| ||||||||||||||||||| | ||||  |||||| |||         ||||||||||||||||||||| |||||||||||||||||||    
T  3798070 ggtgacggctatgatgaggtagctaataggtacttcaccggtgaggaagtaaaaaataccattggattagatatgtggtctagattaaacataaggaaca 3797971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 44722759 - 44722800
Alignment:
Q  246 ctaggatgaggtagctaataggtccctcactagtgagggagt 287  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  44722759 ctaggatgaggtagctaataggtccctcaccagtgagggagt 44722800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 50115308 - 50115348
Alignment:
Q  295 cattggattagatatgtggtccagattaaacataaggaaca 335  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  50115308 cattgaattagatatgtggtctagattaaacataaggaaca 50115348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 46152177 - 46152137
Alignment:
Q  295 cattggattagatatgtggtccagattaaacataaggaaca 335  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  46152177 cattggattagatatgtggtctagattaaacataaggaaca 46152137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University