View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10317_high_20 (Length: 345)
Name: NF10317_high_20
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 22 - 340
Target Start/End: Complemental strand, 49474480 - 49474162
Alignment:
| Q |
22 |
catatcttgtcactgatattcccaaaaatatcatcttgtttttacattgatttttgttttnnnnnnnctgtacaagaaatagtgaaaaaattaacaatat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49474480 |
catatcttgtcactgatattcccaaaaatatcatcttgtttttacattgatttttgttttaaaaaaactgtacaagaaatagtgaaaaaattaacaatat |
49474381 |
T |
|
| Q |
122 |
ttcatatatgaatctttaaaagattgaaccaagttgaaaatagggtgacctttctgtagttattagtaactacaagaaatgaaaatagaaaatgttatga |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49474380 |
ttcatatatgaatctttaaaagattgaaccaagttgaaaatagggtgacctttctgtagttattagtaaccacaagaaatgaaaatagaaaatgttatga |
49474281 |
T |
|
| Q |
222 |
ttctctaccgtttctttcaatttataatttaccagtagctctatggactgccactatgtaagctcagaaagtcattttttgggtatgcagggtcttttgc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49474280 |
ttctctaccgtttctttcaatttataatttaccagtagctctatggactgccacaatgtaagctcagaaagtcattttttgggtatgcagggtcttttgc |
49474181 |
T |
|
| Q |
322 |
tggtcttgttcatctctct |
340 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
49474180 |
tggtcttgtttatctctct |
49474162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University