View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_high_31 (Length: 250)
Name: NF10317_high_31
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1599473 - 1599230
Alignment:
| Q |
1 |
ttctaagtcaaattttggaccagaacctcataattacaataataacttcactccacaagtgagagtagaacaaattaatata--accacaaggaaagtgt |
98 |
Q |
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| T |
1599473 |
ttctaagtcaaattttggaccagaacctcataattacaataataacttcactccacaagtgagagtagaacaaattaatatataaccacaaggaaagtgt |
1599374 |
T |
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| Q |
99 |
agataatgtataataaatatttcttgttgtattgatgatttccacttgcattggagatttccacaagaaaagtacagttcggttttggaaaa---gataa |
195 |
Q |
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| T |
1599373 |
agataatgtataataaatatttcttgttgtattgatgatttccacttgcattggagatttccacaagaaaagtacagttcggttttggaaaagatgataa |
1599274 |
T |
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| Q |
196 |
ttcctattcgatttgaaaccacagaacctacattcaaccttcat |
239 |
Q |
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| T |
1599273 |
ttcctattcgatttgaaaccacagaacctacattcaaccttcat |
1599230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 41222373 - 41222434
Alignment:
| Q |
166 |
aaaagtacagttcggttttggaaaagataattcctattcgatttgaaaccacagaacctaca |
227 |
Q |
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| T |
41222373 |
aaaagtacaatttgggttttgaaaatatagttcctattcggtttgaaaccacataacctaca |
41222434 |
T |
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