View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10317_high_33 (Length: 249)

Name: NF10317_high_33
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10317_high_33
NF10317_high_33
[»] chr1 (6 HSPs)
chr1 (12-233)||(4570710-4570936)
chr1 (49-235)||(4015030-4015217)
chr1 (85-209)||(4016857-4016981)
chr1 (86-233)||(21855444-21855592)
chr1 (81-231)||(10218835-10218992)
chr1 (82-231)||(4366558-4366708)
[»] chr5 (1 HSPs)
chr5 (86-233)||(24330960-24331108)
[»] chr7 (11 HSPs)
chr7 (82-208)||(29106665-29106792)
chr7 (82-157)||(29885105-29885180)
chr7 (82-157)||(29899225-29899300)
chr7 (82-159)||(29859311-29859388)
chr7 (82-233)||(29922054-29922200)
chr7 (82-126)||(29881113-29881157)
chr7 (82-127)||(29867096-29867141)
chr7 (173-209)||(29867188-29867224)
chr7 (173-233)||(29885197-29885257)
chr7 (173-205)||(29899317-29899349)
chr7 (173-209)||(29920128-29920164)
[»] chr3 (2 HSPs)
chr3 (82-123)||(3625591-3625632)
chr3 (173-209)||(3625683-3625719)
[»] chr4 (2 HSPs)
chr4 (173-209)||(1686370-1686406)
chr4 (82-126)||(1686454-1686498)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 4570710 - 4570936
Alignment:
Q  12 aacctgtgtatttgagtggcactgtgaactggttggttactattcacagcagtactaatgtggaacaagctgttattgtttctcttgatttggagacgga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4570710 aacctgtgtatttgagtggcactgtgaactggttggttactattcacagcagtactaatgtggaacaagctgttattgtttctcttgatttggagacgga 4570809  T
Q  112 gacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttg-ctactattg----gtgtgttgggaggctgcctttgtttttctta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    |||||||||||||||||||||||||||||||    
T  4570810 gacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaactagcctactattggtgtgtgtgttgggaggctgcctttgtttttctta 4570909  T
Q  207 ttcacacagggaaactgattttgttat 233  Q
    |||||||||||||||||||||||||||    
T  4570910 ttcacacagggaaactgattttgttat 4570936  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 235
Target Start/End: Complemental strand, 4015217 - 4015030
Alignment:
Q  49 tactattcacagcagtactaatgtggaacaagctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgat 148  Q
    ||||||||||| ||||  || |||||||||  ||||||||||||| |||||||||||||| ||| | ||||| |||||||  || |||||||| ||||||    
T  4015217 tactattcacaccagtgatactgtggaacactctgttattgtttcacttgatttggagacagaggcgtacaagcaatacacagttcctcgtggcgttgat 4015118  T
Q  149 gaagtgccgccgaacttgcta-ctattggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttattg 235  Q
    ||||||| |||  ||| || | ||||||||||| |||||||||||||||||||||||||||  |||||||||||| |||||| |||||    
T  4015117 gaagtgctgcctgactcgccaactattggtgtgctgggaggctgcctttgtttttcttatttgcacagggaaactcattttgatattg 4015030  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 4016981 - 4016857
Alignment:
Q  85 tattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttg-ctactattggtgtgttg 183  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||| ||| |||||   || || | |||||| ||||||||    
T  4016981 tattgtttctcttgatttgg-gacggagacatacaatcaatacatggtgcctcgtggttttgataaagggccgctttacatgccaactattagtgtgttg 4016883  T
Q  184 ggaggctgcctttgtttttcttattc 209  Q
    || |||||||||||||||||||||||    
T  4016882 gggggctgcctttgtttttcttattc 4016857  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 21855592 - 21855444
Alignment:
Q  86 attgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttg-ctactattggtgtgttgg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||| |||  |||||||||| ||||||||   | | ||||||||||| |||     
T  21855592 attgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaaagagccaactattggtgtattga 21855493  T
Q  185 gaggctgcctttgtttttcttattcacacagggaaactgattttgttat 233  Q
    | ||||| ||||||||||| |||||  ||| |||||| |||||||||||    
T  21855492 ggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttat 21855444  T

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Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 81 - 231
Target Start/End: Original strand, 10218835 - 10218992
Alignment:
Q  81 ctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgc---cgaac----ttgctactat 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||| ||||| |||   || ||       | |||||    
T  10218835 ctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgccctgtggttttgatcaagtgacgcattcgtacaacacaccaactat 10218934  T
Q  174 tggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgtt 231  Q
    |||||||||||| || |||||||||||||||| ||  |||| ||||||||||||||||    
T  10218935 tggtgtgttggggggttgcctttgtttttcttttttgcacaaggaaactgattttgtt 10218992  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 4366708 - 4366558
Alignment:
Q  82 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgcc----gaacttgctactattggt 177  Q
    |||||||||||| |||||| |||  || |||||||||||||||||| || ||||||||||  |||| |||||||| ||    ||||   | ||  |||||    
T  4366708 tgttattgtttcgcttgatctgggtacagagacatacaatcaatacttgctgcctcgtggttttgaagaagtgccacctactgaac---caacagttggt 4366612  T
Q  178 gtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgtt 231  Q
    |||||||| | |||||||||||||||||||||  ||| | ||||||||||||||    
T  4366611 gtgttgggggactgcctttgtttttcttattcttacaagaaaactgattttgtt 4366558  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 24331108 - 24330960
Alignment:
Q  86 attgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttg-ctactattggtgtgttgg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||| |||  |||||||||| ||||||||   | | ||||||||||| |||     
T  24331108 attgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaaagagccaactattggtgtattga 24331009  T
Q  185 gaggctgcctttgtttttcttattcacacagggaaactgattttgttat 233  Q
    | ||||| ||||||||||| |||||  ||| |||||| |||||||||||    
T  24331008 ggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttat 24330960  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 29106665 - 29106792
Alignment:
Q  82 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccg-ccgaacttgctactattggtgtg 180  Q
    |||||||||||| ||||||| |  || |||||||||||||||||||| | ||||||||||| |||||||||||||| |  |||   | ||  ||||||||    
T  29106665 tgttattgtttcacttgattggaggatggagacatacaatcaatacaagttgcctcgtgggtttgatgaagtgccgtcaaaacggccaacagttggtgtg 29106764  T
Q  181 ttgggaggctgcctttgtttttcttatt 208  Q
    ||||| ||||||||||||||||||||||    
T  29106765 ttggggggctgcctttgtttttcttatt 29106792  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 29885105 - 29885180
Alignment:
Q  82 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccg 157  Q
    |||||||||||| ||||||||||||||||||||||| || || |||||| |||||| |||| ||||||||||||||    
T  29885105 tgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccg 29885180  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 29899225 - 29899300
Alignment:
Q  82 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccg 157  Q
    |||||||||||| ||||||||||||||||||||||| || || |||||| |||||| |||| ||||||||||||||    
T  29899225 tgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccg 29899300  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 29859311 - 29859388
Alignment:
Q  82 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgcc 159  Q
    |||||||||||| |||||||||| ||  || ||||||||||||||| |  ||||||||||| ||||||| ||||||||    
T  29859311 tgttattgtttcacttgatttggggagtgaaacatacaatcaatacttattgcctcgtgggtttgatgaggtgccgcc 29859388  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 29922200 - 29922054
Alignment:
Q  82 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgcc----gccgaacttgctactattggt 177  Q
    |||||| |||||||||||||| | |||||||||||||||||||||  || ||||||      |||||||||||||    || ||||   | ||  |||||    
T  29922200 tgttatcgtttctcttgatttagggacggagacatacaatcaatatctgttgcctc------ttgatgaagtgccatctgcagaac---caaccgttggt 29922110  T
Q  178 gtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttat 233  Q
    |||||||| ||||||||||||||||||||| |  |||  |||||||||||||||||    
T  29922109 gtgttggggggctgcctttgtttttcttatgcttacaaagaaactgattttgttat 29922054  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 29881113 - 29881157
Alignment:
Q  82 tgttattgtttctcttgatttggagacggagacatacaatcaata 126  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||    
T  29881113 tgttattgtttcacttgatttggggactgagacatacaatcaata 29881157  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 29867096 - 29867141
Alignment:
Q  82 tgttattgtttctcttgatttggagacggagacatacaatcaatac 127  Q
    |||||||||||| |||||||||| ||| |||| |||||||||||||    
T  29867096 tgttattgtttcacttgatttggggactgagaaatacaatcaatac 29867141  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 29867188 - 29867224
Alignment:
Q  173 ttggtgtgttgggaggctgcctttgtttttcttattc 209  Q
    ||||||||||||| | |||||||||||||||||||||    
T  29867188 ttggtgtgttgggggactgcctttgtttttcttattc 29867224  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 29885197 - 29885257
Alignment:
Q  173 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttat 233  Q
    |||||||| | || ||||||||||||||||||||||    || ||||||||||||||||||    
T  29885197 ttggtgtgctagggggctgcctttgtttttcttatttttccaaggaaactgattttgttat 29885257  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 29899317 - 29899349
Alignment:
Q  173 ttggtgtgttgggaggctgcctttgtttttctt 205  Q
    ||||||||||||| |||||||||||||||||||    
T  29899317 ttggtgtgttggggggctgcctttgtttttctt 29899349  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 29920164 - 29920128
Alignment:
Q  173 ttggtgtgttgggaggctgcctttgtttttcttattc 209  Q
    |||||||||||||||||||||||| || |||||||||    
T  29920164 ttggtgtgttgggaggctgccttttttcttcttattc 29920128  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 3625591 - 3625632
Alignment:
Q  82 tgttattgtttctcttgatttggagacggagacatacaatca 123  Q
    |||||||||||| |||||||||| ||| ||||||||||||||    
T  3625591 tgttattgtttcacttgatttggggactgagacatacaatca 3625632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 3625683 - 3625719
Alignment:
Q  173 ttggtgtgttgggaggctgcctttgtttttcttattc 209  Q
    ||||||||||||| | |||||||||||||||||||||    
T  3625683 ttggtgtgttgggggactgcctttgtttttcttattc 3625719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 1686406 - 1686370
Alignment:
Q  173 ttggtgtgttgggaggctgcctttgtttttcttattc 209  Q
    ||||||||||||| | |||||||||||||||||||||    
T  1686406 ttggtgtgttgggggactgcctttgtttttcttattc 1686370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 1686498 - 1686454
Alignment:
Q  82 tgttattgtttctcttgatttggagacggagacatacaatcaata 126  Q
    |||||||||||| ||| |||||| ||| |||||||||||||||||    
T  1686498 tgttattgtttcacttaatttggggactgagacatacaatcaata 1686454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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