View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_high_41 (Length: 229)
Name: NF10317_high_41
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_high_41 |
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| [»] scaffold0029 (2 HSPs) |
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| [»] scaffold0453 (1 HSPs) |
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Alignment Details
Target: scaffold0029 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 88498 - 88300
Alignment:
| Q |
18 |
ttttcatagttattattatcatccaaattaagttacttgttctatggatacgtaacccttaaattccaatactttagttttgctgcacttgtttccattc |
117 |
Q |
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| T |
88498 |
ttttcatagttattattatcatccaaattaagttacttgttctatggatacgtaacccttaaattccaatactttagttttgctgcacttgtttcaattc |
88399 |
T |
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| Q |
118 |
taattggtaatcattactgttcgtcgctgccgtt------ttcaatttgtgtgctgcacggctgtcttattcttctgt---tgcatttcaaagtggcgg |
207 |
Q |
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| T |
88398 |
taattggtaatcgttactgttcgccgctgccgttttcgaattcaatttgtgtgctgcactgctgtcttattcatctgttgctgcatttcaaagtggcgg |
88300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 76773 - 76575
Alignment:
| Q |
18 |
ttttcatagttattattatcatccaaattaagttacttgttctatggatacgtaacccttaaattccaatactttagttttgctgcacttgtttccattc |
117 |
Q |
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| T |
76773 |
ttttcatagttattattatcatccaaattaagttacttgttctatggatacgtaacccttaaattccaatactttagttttgctgcacttgtttcaattc |
76674 |
T |
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| Q |
118 |
taattggtaatcattactgttcgtcgctgccgtt------ttcaatttgtgtgctgcacggctgtcttattcttctgt---tgcatttcaaagtggcgg |
207 |
Q |
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| T |
76673 |
taattggtaatcgttactgttcgccgctgccattttcgaattcaatttgtgtgctgcactgctgtcttattcgtctgttgctgcatttcaaagtggcgg |
76575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 7157973 - 7158171
Alignment:
| Q |
18 |
ttttcatagttattattatcatccaaattaagttacttgttctatggatacgtaacccttaaattccaatactttagttttgctgcacttgtttccattc |
117 |
Q |
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| T |
7157973 |
ttttcatagttattattatcatccaaattaagttacttgttctatggatacgtaacctttaaattccaatactttagttttgctgcacttgtttcaattc |
7158072 |
T |
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| Q |
118 |
taattggtaatcattactgttcgtcgctgccgtt------ttcaatttgtgtgctgcacggctgtcttattcttctgt---tgcatttcaaagtggcgg |
207 |
Q |
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| T |
7158073 |
taattggtaatcgttactgttcgccgctgccgttttcgaattcaatttgtgtgctgcactgctgtcttattcttctgttgctgcatttcaaagtggcgg |
7158171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0453 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0453
Description:
Target: scaffold0453; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 9905 - 10101
Alignment:
| Q |
18 |
ttttcatagttattattat-catccaaattaagttacttgttctatggatacgtaacccttaaattccaatactttagttttgctgcacttgtttccatt |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9905 |
ttttcatagttattattattcatccaaattaagttacttgttctatggatacgtaacccttaaattccaatactttagttttgctgcacttgtttcaatt |
10004 |
T |
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| Q |
117 |
ctaattggtaatcattactgttcgtcgctgccgtt------ttcaatttgtgtgctgcacggctgtcttattcttctgttgc---atttcaaagtgg |
204 |
Q |
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| T |
10005 |
ctaattggtaatcgttactgttcgccgctgccgttttcgaattcaatttgtgtgatgcactgctgtcttattcatctgttgctgtatttcaaagtgg |
10101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 11296775 - 11296690
Alignment:
| Q |
18 |
ttttcatagttattattatcatccaaattaagttacttgttctatg--gatacgtaacccttaaattccaatactttagttttgct |
101 |
Q |
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|||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||||| |
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| T |
11296775 |
ttttaatagttattattatcatccaacttaagttagttgttctatggtgatacgtaacctttaaattccaatacttttgttttgct |
11296690 |
T |
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