View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_11 (Length: 429)
Name: NF10317_low_11
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 7755046 - 7755442
Alignment:
| Q |
18 |
agaaaagagagtgtaaaacgtgttaaattgttgggaaatacttcgtctcgaatgaaatatagacaaaaaattcaaagagttaaatttattcgatatagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
7755046 |
agaaaagagagtgtaaaacgtgttaaattgttagcaaatacttcgtctcgaatgaaatatagacaaaaaattcaaaaagttaaatttattcgaaatagaa |
7755145 |
T |
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| Q |
118 |
tttggatcaaatacatttaactttttggatctttttacttatatatcattccaaagaaagtaaaggcttnnnnnnngttagttcacgatatgaagcaata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
7755146 |
tttggatcaaatacatttaactttttggatctttttacttatatatcattccaaagaaagtaaaggcttaagaaaagttagatcacgatatgaagcaata |
7755245 |
T |
|
| Q |
218 |
gtagcaccgtgaagccgaattgaagaggacccaatgcaacaatgaggacacaaaggaggacagaaacagaagaatctcgcatgacatattgagttgaaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7755246 |
gtagcaccgtgaagccgaattgaagaggacccaatgcaacaatgaggacacaaaggaggacagaaacagaagaatctcgcatgacatattgagttgaaga |
7755345 |
T |
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| Q |
318 |
gtttaagatattagtttgttttgatcccattctgtaccagctaccagtgttaagaaatggtttcttaaggttgtttccatcttcataatcttctctg |
414 |
Q |
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| T |
7755346 |
atttaagatattagtttgttttgatcccattctgtaccagctaccagtgttaagaaatggtttcttaaggttgtttccatcttcataatcttctctg |
7755442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 7920013 - 7920069
Alignment:
| Q |
118 |
tttggatcaaatacatttaac-tttttggatctttttacttatatatcattccaaag |
173 |
Q |
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| T |
7920013 |
tttggaccaaatacatttaacttttttggatatttttggttatatttcattccaaag |
7920069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 45335850 - 45335889
Alignment:
| Q |
104 |
tattcgatatagaatttggatcaaatacatttaacttttt |
143 |
Q |
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|||| |||||| |||||||||||||||||||||||||||| |
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| T |
45335850 |
tattagatataaaatttggatcaaatacatttaacttttt |
45335889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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