View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_12 (Length: 423)
Name: NF10317_low_12
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_12 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 41311200 - 41311395
Alignment:
| Q |
1 |
aacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattctta |
100 |
Q |
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| T |
41311200 |
aacatccatttcagtcttatcatcataaaccagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattctta |
41311299 |
T |
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| Q |
101 |
taaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagataccatgtatttttat |
196 |
Q |
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| T |
41311300 |
taaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaaaatctccaagtcaattgaactagataccatgtatttttat |
41311395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 43164878 - 43165062
Alignment:
| Q |
1 |
aacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattctta |
100 |
Q |
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| T |
43164878 |
aacatctatttcagtctcataattataaaccagccaatgaatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaa |
43164977 |
T |
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| Q |
101 |
taaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacca |
185 |
Q |
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| T |
43164978 |
taaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaatgagaaaatctccaagtcaatcgaactagatacca |
43165062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 175
Target Start/End: Original strand, 30125184 - 30125328
Alignment:
| Q |
31 |
cagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgt |
130 |
Q |
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| T |
30125184 |
cagccaatgaatagtcccattcaagaacaacccaactctgggccatccgttagagcgagcagtattcctataaggcaaatgagaatcaaactcaatttcc |
30125283 |
T |
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| Q |
131 |
tcccattgattacctctcaatgagaacatctccaagtcaattgaa |
175 |
Q |
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| T |
30125284 |
tcccacttattagctctcaatgggaaaatctccaagtcaattgaa |
30125328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 30165727 - 30165608
Alignment:
| Q |
1 |
aacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattctta |
100 |
Q |
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| T |
30165727 |
aacatccatttcagtctgataattataaaccagccaatgaatagaaccattgaagaacgacccaactctgggaccaccttcagagcatgcagggttccta |
30165628 |
T |
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| Q |
101 |
taaggcaaatcagaatcaaa |
120 |
Q |
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| T |
30165627 |
taaggcaaatgagaatcaaa |
30165608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 284 - 375
Target Start/End: Original strand, 30131424 - 30131515
Alignment:
| Q |
284 |
ataggagacagaggtatttgcttgttgacacgagtggatggattccataggtaaaggcatttgtaacagtccaataatagaaagcctctaca |
375 |
Q |
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| T |
30131424 |
ataggagagagaggtatttgtttattgacaccagtggatggattccataggtagaggcatttgtaaacgtccaataatagaaaccctctaca |
30131515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 387
Target Start/End: Original strand, 30125466 - 30125537
Alignment:
| Q |
316 |
agtggatggattccataggtaaaggcatttgtaacagtccaataatagaaagcctctacacgaacctataat |
387 |
Q |
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| T |
30125466 |
agtggatggattccaaaggtagaggcatgtgttacagtccaataatagaaaccctctacacgaacctctaat |
30125537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 28180514 - 28180559
Alignment:
| Q |
139 |
attacctctcaatgagaacatctccaagtcaattgaactagatacc |
184 |
Q |
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|||| ||||||||||||| ||||| || |||||||||||||||||| |
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| T |
28180514 |
attagctctcaatgagaaaatctctaattcaattgaactagatacc |
28180559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 21430244 - 21430161
Alignment:
| Q |
100 |
ataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacc |
184 |
Q |
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| T |
21430244 |
ataaggcaaatgagaagcaacctcaattttttcc-attgattagctctcaatgagaaaatctctaagtcaattgaactagatacc |
21430161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 21426550 - 21426470
Alignment:
| Q |
99 |
tataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactag |
179 |
Q |
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| T |
21426550 |
tataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaatcttcaagtcaattgaactag |
21426470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1051 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 1971 - 2039
Alignment:
| Q |
101 |
taaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtca |
169 |
Q |
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| T |
1971 |
taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctccaagtca |
2039 |
T |
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