View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10317_low_13 (Length: 415)
Name: NF10317_low_13
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 131 - 266
Target Start/End: Original strand, 39350131 - 39350266
Alignment:
| Q |
131 |
gagttatacatgttaattgattattaggtcaaaattctctggaaaatcttcaaccagataaagtagaagaagctcctcttcctaaggttccactgttttt |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39350131 |
gagttatacatgttaattgattattaggtcaaaattctctggaaaatcttcaaccagataaagtagaagaagctcctcttcctaaggttccgctgttttt |
39350230 |
T |
|
| Q |
231 |
cgaagattcttctcttcgtaagtgttttcttctcta |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
39350231 |
cgaagattcttctcttcgtaagtgttttcttctcta |
39350266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 329 - 415
Target Start/End: Original strand, 39350329 - 39350415
Alignment:
| Q |
329 |
cattacccagttacatatgtttatctattattaggtaaagaaaaatctcctgataattgccaacagctttgttcagaagaatctcct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39350329 |
cattacccagttacatatgtttatctattatcaggtaaagaaaaatctcctgataattgccaacagctttgttcagaagaatctcct |
39350415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 39350025 - 39350077
Alignment:
| Q |
20 |
gatactattcctcagttttctgctatcaccgacttcgattctccaatcggtac |
72 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39350025 |
gatactattcctcagttttctgctatcactgacttcgattctccaatcggtac |
39350077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University