View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_14 (Length: 411)
Name: NF10317_low_14
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 14609793 - 14610173
Alignment:
| Q |
15 |
gacctagacgtccttcatgagaaattccacgttgtaaccccgacaaatcccacaggaagatctgatctgcctggttgtgacctctttgtgtcgacggctg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14609793 |
gacctagacgtccttcatgagaaattccacgttgtaaccccgacaaatcccacagcaagatctgatctgcctggttgtgacctctttgtgtcgacggctg |
14609892 |
T |
|
| Q |
115 |
atcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgcttgttatgtttcagatga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14609893 |
atcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgcttgttatgtttcagatga |
14609992 |
T |
|
| Q |
215 |
tggaggtgctcttttaacattcgaggccatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14609993 |
tggaggtgctcttttaacattcgaggccatggctgaggctgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaat |
14610092 |
T |
|
| Q |
315 |
cctgattcttactttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaaggatagaagaagggtg |
395 |
Q |
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| T |
14610093 |
cctgattcttactttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaaggatagaagaagggtg |
14610173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 59 - 395
Target Start/End: Complemental strand, 14598639 - 14598303
Alignment:
| Q |
59 |
aaatcccacaggaagatctgatctgcctggttgtgacctctttgtgtcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctt |
158 |
Q |
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| T |
14598639 |
aaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaataccattctt |
14598540 |
T |
|
| Q |
159 |
tccatattagcagttgattatccagtggagaagctcgcttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggccgcaa |
258 |
Q |
| |
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|||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||| || | || || || |||||||||||||||| |
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| T |
14598539 |
tccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatggaggagctctcttgagttttgaagcgatggctgaggccgcaa |
14598440 |
T |
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| Q |
259 |
gttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactttgcctcaaatgtcgatccaactaagaacaa |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||| |
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| T |
14598439 |
gttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactttgcgttaaaaatcgatccaaccaagaacaa |
14598340 |
T |
|
| Q |
359 |
gagcagattagattttgtgaaggatagaagaagggtg |
395 |
Q |
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||| | | | ||||| |||||||| |||||||||||| |
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| T |
14598339 |
gagtaaactggatttcgtgaaggacagaagaagggtg |
14598303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 99 - 329
Target Start/End: Complemental strand, 12194907 - 12194677
Alignment:
| Q |
99 |
tttgtgtcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgctt |
198 |
Q |
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|||||||| || || ||||| || |||||||| || ||||| || || |||||||||||||| || ||||||||||||| || || || || ||||| | |
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| T |
12194907 |
tttgtgtcaactgccgatccagaaaaagagccaccccttgttaccgcaaataccattctttcaattctagcagttgattaccctgttgataaactcgcat |
12194808 |
T |
|
| Q |
199 |
gttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaa |
298 |
Q |
| |
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||||||| || || || || ||| | ||| |||| || ||||||||||| ||||| ||||||||||| || || |||||||| |||||||| || ||| | |
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| T |
12194807 |
gttatgtctctgacgacggcggttcacttctaacttttgaggccatggccgaggcagcaagttttgcggagttgtgggttcctttttgtcggaagcacga |
12194708 |
T |
|
| Q |
299 |
tattgagccaaggaatcctgattcttacttt |
329 |
Q |
| |
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||||| |||||||| || || ||||||||| |
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| T |
12194707 |
cattgaaccaaggaacccggaatcttacttt |
12194677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 97 - 328
Target Start/End: Complemental strand, 29919210 - 29918979
Alignment:
| Q |
97 |
tctttgtgtcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgc |
196 |
Q |
| |
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||||||| || || ||||||||||| ||||| || || ||||| || || || ||||| | || || ||||| | ||| |||||||| |||||||| | |
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| T |
29919210 |
tctttgtttcaactgctgatcctgagaaagaaccaccacttgtcacagcaaacaccatcttgtcgattttagctgctgactatccagttgagaagctttc |
29919111 |
T |
|
| Q |
197 |
ttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacac |
296 |
Q |
| |
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||| |||||||| |||||||| ||||| |||||||| || ||||| ||||||||||| || || ||||| || |||||||| || || |||||||| |
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| T |
29919110 |
ttgctatgtttctgatgatgggggtgcacttttaacttttgaggcaatggctgaggctgctagctttgccaataactgggttccattctgccgcaaacat |
29919011 |
T |
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| Q |
297 |
aatattgagccaaggaatcctgattcttactt |
328 |
Q |
| |
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|||| ||||| ||||||||||| || ||||| |
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| T |
29919010 |
gatatagagcctaggaatcctgaatcatactt |
29918979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 319
Target Start/End: Original strand, 44632913 - 44633135
Alignment:
| Q |
97 |
tctttgtgtcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgc |
196 |
Q |
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||||||| || || || ||||| || |||||||| |||||||||||||| || |||||| | || || | |||||||||||||| ||||| || | || |
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| T |
44632913 |
tctttgtttcaactgcagatccagaaaaagagccacctcttgtaactgcaaacaccattttatctatccttgcagttgattatcctgtggaaaaagttgc |
44633012 |
T |
|
| Q |
197 |
ttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggccgcaagttttgc-tgatttatgggttcccttttgtcgcaaaca |
295 |
Q |
| |
|
||||||| | || |||||||| || |||||||| ||||| || || | |||||| | || |||||||| ||||| |||||||| || ||| | ||||| |
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|
| T |
44633013 |
ttgttatttgtctgatgatggtggagctcttttgacatttgaagctcttgctgagactgctagttttgcaagattt-tgggttcctttctgtagaaaaca |
44633111 |
T |
|
| Q |
296 |
caatattgagccaaggaatcctga |
319 |
Q |
| |
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| | ||||||||||| |||||||| |
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| T |
44633112 |
ccaaattgagccaagaaatcctga |
44633135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 47918105 - 47918178
Alignment:
| Q |
177 |
tatccagtggagaagctcgcttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctga |
250 |
Q |
| |
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|||||||| |||||||| |||| |||||||| |||||||||||||| |||||||| || |||| |||||||| |
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| T |
47918105 |
tatccagttgagaagctttcttgctatgtttctgatgatggaggtgcacttttaacttttaaggcaatggctga |
47918178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 319
Target Start/End: Complemental strand, 41491900 - 41491819
Alignment:
| Q |
238 |
aggccatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctga |
319 |
Q |
| |
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||||||||| ||||| ||||||||||||||||| |||||||| |||||||| || ||||| ||||| | |||||| ||||| |
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| T |
41491900 |
aggccatggaagaggcagcaagttttgctgatttgtgggttccattttgtcggaagcacaacattgacctaaggaaccctga |
41491819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 15419432 - 15419374
Alignment:
| Q |
270 |
ttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactt |
328 |
Q |
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|||||||| || |||||||| ||||||||||| || ||||||||||| ||| ||||||| |
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| T |
15419432 |
ttatgggtaccattttgtcgaaaacacaatatcgaaccaaggaatccagatgcttactt |
15419374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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