View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_16 (Length: 404)
Name: NF10317_low_16
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 49473734 - 49474114
Alignment:
| Q |
10 |
tagcatagggcaaatattggcgtggacaggaataaaatcaaattgtcataacagaaatatcatcacactataaaggaatgataggatgaagggaatgatt |
109 |
Q |
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| T |
49473734 |
tagcatagggcaaatattggcgtggacaggaataaaatcaaattgtcataacaaaaatatcatcacactataaaggaatgataggatgaagggaatgatt |
49473833 |
T |
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| Q |
110 |
catggacataccatcaatgtcatatggaggtggaaagaattgtaagtaacaaaaggaagaaactgtcgtccctgataaaagaagataaagtaagaaacgt |
209 |
Q |
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| T |
49473834 |
catggacataccatcaatgtcatatggaggtggaaagaattgtaagtaacaaaaggaagaaactgtcgtccctgataaaagaagttaaagtaagaaacgt |
49473933 |
T |
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| Q |
210 |
tgccgaaaggtttacag-aaatatttatttactgaaatacttactcaatttggcttcaataaactaacctataagacctccggcaaacacatcttgccaa |
308 |
Q |
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| T |
49473934 |
tgccgaaaggtttacagaaaatatttatttactgaaatacttggtcaatttggcttcaataaactaacctataagacctccagcaaacacatcttgccaa |
49474033 |
T |
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| Q |
309 |
tgatgccaataatcatcaacacgggagacagcaatcaaagctgccaggaggactggtaagagaacaagacagagctttgca |
389 |
Q |
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| T |
49474034 |
tgatgccaataatcatcaacacgggagacagcaatcaaagctgccaggaggactggtaagagaacaagacagagctttgca |
49474114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 49486280 - 49486325
Alignment:
| Q |
274 |
aacctataagacctccggcaaacacatcttgccaatgatgccaata |
319 |
Q |
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| T |
49486280 |
aacctagaaggcctccagcaaacacatcttgccaatggtgccaata |
49486325 |
T |
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