View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10317_low_17 (Length: 388)

Name: NF10317_low_17
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10317_low_17
NF10317_low_17
[»] chr7 (3 HSPs)
chr7 (17-375)||(31410911-31411269)
chr7 (20-326)||(31414875-31415187)
chr7 (17-347)||(31407734-31408064)
[»] chr8 (1 HSPs)
chr8 (17-166)||(1008593-1008742)


Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 31410911 - 31411269
Alignment:
Q  17 gcagagataagagatccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcagctttggcttacgacaaagctgctttta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31410911 gcagagataagagatccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcagctttggcttacgacaaagctgctttta 31411010  T
Q  117 agatgcgtggccgaaaggccaagcttaattttccccacctcattggctctgatgtgtttacaccagagccagagaaggaggtggttttgaaacgggaatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31411011 agatgcgtggccgaaaggccaagcttaattttccccacctcattggctctgatgtgtttacaccagagccagagaaggaggtggttttgaaacgggaatc 31411110  T
Q  217 accggagccttcttcatcggaggaaagttgtgagtcatcgtcaccaaggttaaagaggaggaggggcacggttgacctacttaacaaactagccaagaat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31411111 accggagccttcttcatcggaggaaagttgtgagtcatcgtcaccaaggttaaagaggaggaggggcacggttgacctacttaacaaactagccaagaat 31411210  T
Q  317 agatgccaagctaaggtggttgaaattgaaacggcatcatcacaggctaatgattttga 375  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31411211 agatgccaagctaaggtggttgaaattgaaacggcatcatcacatgctaatgattttga 31411269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 31414875 - 31415187
Alignment:
Q  20 gagataagagatccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcagctttggcttacgacaaagctgcttttaaga 119  Q
    |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31414875 gagataagagatccaaaaaagaatggtgctagagtttggcttggaacgtatgtgactgaggaggaagcagctttggcttacgacaaagctgcttttaaga 31414974  T
Q  120 tgcgtggccgaaaggccaagcttaattttccccacctcattggctctgatgtgtttacaccagagccagagaaggaggtggttttgaaacgggaatcacc 219  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |||||||||||||||| ||||||||||    
T  31414975 tgcgaggccgaaaggccaagcttaattttccccacctcattggctctgatgtgtctacatctgagccagagagggaggtggttttgaaaagggaatcacc 31415074  T
Q  220 ggagc------cttcttcatcggaggaaagttgtgagtcatcgtcaccaaggttaaagaggaggaggggcacggttgacctacttaacaaactagccaag 313  Q
     ||||      ||||||||||||||| |||||||||||||  ||||||| |||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  31415075 cgagccttcttcttcttcatcggagggaagttgtgagtcagtgtcaccagggttgaagaggaggaggggcatggttgacctacttaacaaattagccaag 31415174  T
Q  314 aatagatgccaag 326  Q
    |||||| ||||||    
T  31415175 aatagaagccaag 31415187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 31407734 - 31408064
Alignment:
Q  17 gcagagataagagatccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcagctttggcttacgacaaagctgctttta 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |    
T  31407734 gcagagataagagacccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcaggttttgcttacgataaagctgctttca 31407833  T
Q  117 agatgcgtggccgaaaggccaagcttaattttccccacctcattggctctgatgtgtttacaccagagccagagaaggaggtggttttgaaacgggaatc 216  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |   | ||| || ||| | |||||| |||||||||||||||    
T  31407834 agatgcgtggccaaaaggccaagcttaattttccccacctcattggctctgatgtgtacatgtcggagtcaaagaggaaggtggctttgaaacgggaatc 31407933  T
Q  217 accggagc---cttcttcatcggaggaaagttgtgagtcatcgtcaccaaggttaaagaggaggaggggcacggttgacctacttaacaaactagccaag 313  Q
    ||| ||||   ||||||||||||| || ||||||||||||||||||||| | |  ||||||||||   ||| ||||||||||||||||||| ||||||||    
T  31407934 accagagccttcttcttcatcggaagatagttgtgagtcatcgtcaccaggatcgaagaggagga---gcatggttgacctacttaacaaattagccaag 31408030  T
Q  314 aatagatgccaagctaaggtggttgaaattgaaa 347  Q
    |||||| ||||||  | |||||| |||| |||||    
T  31408031 aatagaagccaagtcatggtggtagaaaatgaaa 31408064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 1008593 - 1008742
Alignment:
Q  17 gcagagataagagatccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcagctttggcttacgacaaagctgctttta 116  Q
    ||||||||||| |||||||| |||||||| ||||| ||||||||||| || || |  ||||| || ||||| | ||||||||| || | |||  |||| |    
T  1008593 gcagagataagggatccaaagaagaatggagctagagtttggcttggaacgtacgaaactgaagaagaagctggtttggcttatgatagagccactttca 1008692  T
Q  117 agatgcgtggccgaaaggccaagcttaattttccccacctcattggctct 166  Q
    |||| |||||  |||| |||||||| |||||||||||||| || ||||||    
T  1008693 agatccgtggtagaaaagccaagctcaattttccccaccttatcggctct 1008742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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