View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10317_low_19 (Length: 385)

Name: NF10317_low_19
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10317_low_19
NF10317_low_19
[»] chr3 (16 HSPs)
chr3 (1-368)||(32408809-32409177)
chr3 (1-98)||(5327486-5327582)
chr3 (19-73)||(4219228-4219281)
chr3 (19-113)||(36624722-36624814)
chr3 (19-113)||(49628115-49628207)
chr3 (20-73)||(106064-106116)
chr3 (19-72)||(34103745-34103796)
chr3 (11-72)||(34960878-34960937)
chr3 (19-72)||(40013300-40013351)
chr3 (19-72)||(48652468-48652519)
chr3 (19-72)||(54239046-54239097)
chr3 (12-72)||(3312493-3312551)
chr3 (12-72)||(22485015-22485073)
chr3 (27-83)||(33937416-33937471)
chr3 (27-98)||(37451761-37451833)
chr3 (13-45)||(42398552-42398584)
[»] chr1 (14 HSPs)
chr1 (1-113)||(18889084-18889195)
chr1 (1-112)||(38783077-38783187)
chr1 (1-87)||(32301373-32301458)
chr1 (14-46)||(31427135-31427167)
chr1 (19-73)||(28399341-28399394)
chr1 (19-113)||(42490902-42490994)
chr1 (19-72)||(424311-424362)
chr1 (19-72)||(4882379-4882430)
chr1 (19-72)||(12871671-12871722)
chr1 (16-113)||(20411582-20411677)
chr1 (19-72)||(27534749-27534800)
chr1 (19-72)||(29726616-29726667)
chr1 (13-45)||(29999924-29999956)
chr1 (13-45)||(40948376-40948408)
[»] chr8 (9 HSPs)
chr8 (1-97)||(42260959-42261054)
chr8 (19-113)||(31202467-31202559)
chr8 (20-73)||(2968580-2968632)
chr8 (19-72)||(7579883-7579934)
chr8 (19-72)||(9501640-9501691)
chr8 (53-114)||(9628918-9628978)
chr8 (19-72)||(30026908-30026959)
chr8 (19-72)||(39067717-39067768)
chr8 (20-72)||(41361782-41361832)
[»] chr2 (12 HSPs)
chr2 (1-97)||(17792498-17792593)
chr2 (1-96)||(20607314-20607408)
chr2 (7-99)||(11581136-11581227)
chr2 (16-112)||(28231114-28231208)
chr2 (19-72)||(10287026-10287077)
chr2 (19-72)||(38535325-38535376)
chr2 (20-72)||(12704737-12704787)
chr2 (1-100)||(13548901-13548999)
chr2 (12-72)||(13740673-13740731)
chr2 (64-112)||(15261476-15261524)
chr2 (13-45)||(19042568-19042600)
chr2 (13-45)||(39837275-39837307)
[»] chr5 (9 HSPs)
chr5 (245-340)||(36163198-36163294)
chr5 (19-112)||(14534903-14535000)
chr5 (8-100)||(374304-374395)
chr5 (1-99)||(17523524-17523621)
chr5 (19-72)||(12891726-12891777)
chr5 (19-72)||(17331378-17331429)
chr5 (19-72)||(28040679-28040730)
chr5 (19-72)||(33164488-33164539)
chr5 (19-72)||(39179848-39179899)
[»] chr4 (10 HSPs)
chr4 (20-113)||(26742484-26742575)
chr4 (1-114)||(51958357-51958471)
chr4 (19-73)||(6882005-6882057)
chr4 (19-73)||(12717137-12717190)
chr4 (19-72)||(6911730-6911781)
chr4 (19-72)||(29268797-29268848)
chr4 (19-72)||(30202088-30202139)
chr4 (20-113)||(43244402-43244493)
chr4 (12-72)||(26674422-26674480)
chr4 (12-72)||(39837645-39837703)
[»] chr7 (13 HSPs)
chr7 (1-116)||(14810609-14810723)
chr7 (1-116)||(15257604-15257718)
chr7 (20-100)||(43256570-43256649)
chr7 (20-102)||(27705090-27705171)
chr7 (12-72)||(15674625-15674683)
chr7 (16-62)||(26161039-26161084)
chr7 (19-113)||(39532995-39533087)
chr7 (19-72)||(10094491-10094542)
chr7 (22-99)||(39990197-39990272)
chr7 (19-72)||(42603789-42603840)
chr7 (19-72)||(43847120-43847171)
chr7 (20-72)||(28664933-28664983)
chr7 (16-72)||(45457573-45457627)
[»] chr6 (6 HSPs)
chr6 (19-114)||(9044100-9044193)
chr6 (19-72)||(2304830-2304881)
chr6 (19-72)||(12481390-12481441)
chr6 (54-98)||(12201705-12201749)
chr6 (13-45)||(16277263-16277295)
chr6 (13-45)||(28317529-28317561)
[»] scaffold1379 (1 HSPs)
scaffold1379 (19-72)||(1106-1157)
[»] scaffold0321 (1 HSPs)
scaffold0321 (19-72)||(7144-7195)
[»] scaffold0312 (1 HSPs)
scaffold0312 (19-72)||(6187-6238)
[»] scaffold0155 (1 HSPs)
scaffold0155 (12-72)||(35132-35192)
[»] scaffold0056 (1 HSPs)
scaffold0056 (20-113)||(74173-74264)
[»] scaffold0038 (1 HSPs)
scaffold0038 (13-45)||(108635-108667)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 32408809 - 32409177
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattca 100  Q
    ||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32408809 aaagtcgtgctagacgatgaaatcaccaaaacaaacaaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattca 32408908  T
Q  101 gatggatgattttggagaaggaaataggtgacgattagggtgcgttatagtacctctcttattcnnnnnnnnnnnnnnnnnn-gttgcttacaaaagaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||    
T  32408909 gatggatgattttggagaaggaaataggtgacgattagggtgcgttatagtacctctcttattcttcttttaatcttttttttgttgcttacaaaagaaa 32409008  T
Q  200 atacttcaggagatttcagagcaaattatacatatgctttaatggggaagacaagagacaaggtaggagcagggtatatgtatgtaggacattgttttgt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32409009 atacttcaggagatttcagagcaaattatacatatgctttaatggggaagacaagagacaaggtaggagcagggtatatgtatgtaggacattgttttgt 32409108  T
Q  300 tgtaatgatttatgagcacacatgggaatagaggtaggtacctgatgctgatttgtccttgtggaaagt 368  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32409109 tgtaatgatttatgagcacacatgtgaatagaggtaggtacctgatgctgatttgtccttgtggaaagt 32409177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 5327486 - 5327582
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaatt 98  Q
    ||||||||||||||  | |||||||| ||||||||||||||||||| |||| || ||||| | ||||||||||  || ||||||||||||||||||||    
T  5327486 aaagttgtgctagacaacgaaatcacaaaaacaaacgaaagaaaactgaaa-atttgtgataatcacttatttaactgaaagagaaagaaaaacaatt 5327582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 4219281 - 4219228
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttattt 73  Q
    |||||||  ||||||||||||||||||| |||| |||||||||| ||||||||||    
T  4219281 gaaatcataaaaacaaacgaaagaaaactgaaa-atatgtgaaaatcacttattt 4219228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 36624722 - 36624814
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcagatggatgatttt 113  Q
    |||||||| ||||||||| ||||||||| |||| |||||||||| ||||||||||   ||  | |||| |||||||||||| ||||| |||||||    
T  36624722 gaaatcacaaaaacaaacaaaagaaaacagaaa-atatgtgaaa-tcacttatttagttaggatagaaggaaaaacaattcggatgggtgatttt 36624814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 49628115 - 49628207
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcagatggatgatttt 113  Q
    |||||||| |||||||||||||||||| | ||| |||||||||| |||||||||   |||  | |||| ||||||||||||||| || |||||||    
T  49628115 gaaatcacaaaaacaaacgaaagaaaa-caaaaaatatgtgaaa-tcacttattcaactaggatagaaggaaaaacaattcagaggggtgatttt 49628207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 106064 - 106116
Alignment:
Q  20 aaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttattt 73  Q
    ||||||| |||||||||||||||||| | ||| |||||||||| ||||||||||    
T  106064 aaatcacaaaaacaaacgaaagaaaa-ctaaaaatatgtgaaaatcacttattt 106116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 34103745 - 34103796
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  34103745 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 34103796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 34960878 - 34960937
Alignment:
Q  11 tagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||| ||||||||||| |||||||||||||||||||  ||| |||||||||| |||||||||    
T  34960878 tagacgatgaaatcacaaaaacaaacgaaagaaaacataaa-atatgtgaaa-tcacttatt 34960937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 40013300 - 40013351
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  40013300 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 40013351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 48652468 - 48652519
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  48652468 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 48652519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 54239046 - 54239097
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  54239046 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 54239097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 3312551 - 3312493
Alignment:
Q  12 agatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||||||| || |||||||||||||||||||  ||| |||||||||| |||||||||    
T  3312551 agatgatgaaataacaaaaacaaacgaaagaaaacttaaa-atatgtgaaa-tcacttatt 3312493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 22485073 - 22485015
Alignment:
Q  12 agatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||| |||||||| ||||||||||||||||||| |||| ||||| |||| |||||||||    
T  22485073 agatgacgaaatcacaaaaacaaacgaaagaaaacagaaa-atatgcgaaa-tcacttatt 22485015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 33937416 - 33937471
Alignment:
Q  27 caaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaaga 83  Q
    |||||||||||||||||| | |||| ||| |||||| ||||||||||| ||||||||    
T  33937416 caaaacaaacgaaagaaagctgaaa-atacgtgaaaatcacttattttactaaaaga 33937471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 37451833 - 37451761
Alignment:
Q  27 caaaacaaacgaaagaaaaccgaaagatatgtgaaag-tcacttatttttctaaaagagaaagaaaaacaatt 98  Q
    |||||| |||||||||||| | ||| ||||||||||  ||||||| ||  | |||||||||||||||||||||    
T  37451833 caaaaccaacgaaagaaaagctaaaaatatgtgaaaaatcacttaattgaccaaaagagaaagaaaaacaatt 37451761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 42398584 - 42398552
Alignment:
Q  13 gatgatgaaatcaccaaaacaaacgaaagaaaa 45  Q
    |||||||||||||| ||||||||||||||||||    
T  42398584 gatgatgaaatcacaaaaacaaacgaaagaaaa 42398552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 18889195 - 18889084
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattca 100  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||  ||||| ||||||||| ||| ||||||| |||||||||||| ||||||||||||    
T  18889195 aaagttatgctagacgatgaaatcaccaaaacaaatgaaagaaaattgaaag-tatgtgaaaatcatttattttgctaaaagagaaataaaaacaattca 18889097  T
Q  101 gatggatgatttt 113  Q
    || || |||||||    
T  18889096 gaggggtgatttt 18889084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 38783187 - 38783077
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattca 100  Q
    ||||||||||| || || |||||||| ||||| |||||| |||||| |||| |||||| ||| ||||||||||  |||||||||||||||||||||||||    
T  38783187 aaagttgtgctggacgacgaaatcacaaaaacgaacgaaggaaaactgaaa-atatgttaaaatcacttatttaactaaaagagaaagaaaaacaattca 38783089  T
Q  101 gatggatgattt 112  Q
     ||| |||||||    
T  38783088 aatgaatgattt 38783077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 32301458 - 32301373
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaa 87  Q
    ||||| |||||||| ||||||||||| |||||||||||||||| ||  |||||||||||||| ||||||||||| ||||||||||||    
T  32301458 aaagtcgtgctagacgatgaaatcacaaaaacaaacgaaagaatact-aaagatatgtgaaaatcacttattttgctaaaagagaaa 32301373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 31427135 - 31427167
Alignment:
Q  14 atgatgaaatcaccaaaacaaacgaaagaaaac 46  Q
    |||||||||||||||||||||||||||||||||    
T  31427135 atgatgaaatcaccaaaacaaacgaaagaaaac 31427167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 28399341 - 28399394
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttattt 73  Q
    |||||||| |||||||||||||||||| | ||| |||||||||| ||||||||||    
T  28399341 gaaatcacaaaaacaaacgaaagaaaa-ctaaaaatatgtgaaaatcacttattt 28399394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 42490994 - 42490902
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcagatggatgatttt 113  Q
    |||||||| ||||||||||||||||||| | ||||||||||||| |||||||||    ||| | |||| |||||||||||| || || |||||||    
T  42490994 gaaatcacaaaaacaaacgaaagaaaactg-aagatatgtgaaa-tcacttattcaattaagatagaacgaaaaacaattcggaggggtgatttt 42490902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 424311 - 424362
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  424311 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 424362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 4882379 - 4882430
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  4882379 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 4882430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 12871722 - 12871671
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  12871722 gaaatcacaaaaacaaacgaaagaaaactgaaa-atatgtgaaa-tcacttatt 12871671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 20411677 - 20411582
Alignment:
Q  16 gatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcagatggatgatttt 113  Q
    ||||||||| | ||||||||||||||||||| |||| |||||||||| |||||||||    |  || | ||||||||||||||| ||||| |||||||    
T  20411677 gatgaaatcccaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttattcaatttgaataaaaagaaaaacaattcggatgggtgatttt 20411582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 27534800 - 27534749
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  27534800 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 27534749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 29726616 - 29726667
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  29726616 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 29726667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 29999956 - 29999924
Alignment:
Q  13 gatgatgaaatcaccaaaacaaacgaaagaaaa 45  Q
    |||||||||||||| ||||||||||||||||||    
T  29999956 gatgatgaaatcacaaaaacaaacgaaagaaaa 29999924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 40948376 - 40948408
Alignment:
Q  13 gatgatgaaatcaccaaaacaaacgaaagaaaa 45  Q
    |||||||||||||| ||||||||||||||||||    
T  40948376 gatgatgaaatcacaaaaacaaacgaaagaaaa 40948408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 42261054 - 42260959
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaat 97  Q
    ||||| |||||||| |||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||| |||| ||||||| |||||||||    
T  42261054 aaagtcgtgctagacgatgaaatcaccaaaacaaacgaaagaaaatc-aaaaatatgtgaaaatcacttattttgctaatagagaaataaaaacaat 42260959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 31202559 - 31202467
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcagatggatgatttt 113  Q
    |||||||| ||||||||||||| ||||| |||| |||||||||| |||||||||    || || ||||||||||||||||  |||||||||||||    
T  31202559 gaaatcacaaaaacaaacgaaacaaaacagaaa-atatgtgaaa-tcacttattcaattataatagaaagaaaaacaatttggatggatgatttt 31202467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 2968632 - 2968580
Alignment:
Q  20 aaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttattt 73  Q
    ||||||| |||||||||||||||||| | ||| |||||||||| ||||||||||    
T  2968632 aaatcacaaaaacaaacgaaagaaaa-ctaaaaatatgtgaaaatcacttattt 2968580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 7579883 - 7579934
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  7579883 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 7579934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 9501691 - 9501640
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  9501691 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 9501640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 9628918 - 9628978
Alignment:
Q  53 atatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcagatggatgattttg 114  Q
    ||||||| || ||| ||||||  ||||||| ||||||||| |||||||||||||||||||||    
T  9628918 atatgtggaaatcatttatttaactaaaagtgaaagaaaa-caattcagatggatgattttg 9628978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 30026908 - 30026959
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  30026908 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 30026959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 39067717 - 39067768
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  39067717 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 39067768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 41361832 - 41361782
Alignment:
Q  20 aaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    ||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  41361832 aaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 41361782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17792593 - 17792498
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaat 97  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||| |||| |||||||||| || |||||||  ||| ||||||||||||||||||    
T  17792593 aaagtcgtgctagatgacgaaatcacaaaaacaaacgaaagaaaactgaaa-atatgtgaaaatcgcttatttaactagaagagaaagaaaaacaat 17792498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 20607314 - 20607408
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaa 96  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||| |||| |||||||||| ||||||| ||  |||||| ||||||||||||||    
T  20607314 aaagtcgtgctagatgaagaaatcacaaaaacaaacgaaagaaaactgaaa-atatgtgaaaatcacttagttaactaaaaaagaaagaaaaacaa 20607408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 11581136 - 11581227
Alignment:
Q  7 gtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattc 99  Q
    |||||||| || |||||||| ||||||||| |||||||||  ||| |||| ||||| ||||||||||  | ||||||||||||||||||||||    
T  11581136 gtgctagacgacgaaatcacaaaaacaaaccaaagaaaactaaaa-atatatgaaaatcacttatttaacaaaaagagaaagaaaaacaattc 11581227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 28231114 - 28231208
Alignment:
Q  16 gatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcagatggatgattt 112  Q
    |||| |||||| ||||||||||||||||||| |||| |||||||||| |||||||||   | || | |||| |||||||||||| ||||| ||||||    
T  28231114 gatggaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttattcaaccaagatagaaggaaaaacaattcggatgggtgattt 28231208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 10287026 - 10287077
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  10287026 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 10287077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 38535325 - 38535376
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  38535325 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 38535376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 12704787 - 12704737
Alignment:
Q  20 aaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    ||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  12704787 aaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 12704737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 13548901 - 13548999
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaag-tcacttatttttctaaaagagaaagaaaaacaattc 99  Q
    ||||||||||||||||| ||| |||| ||||| ||| |||||||   |||| ||||||||||  | ||||||||  |||||||||||||| |||||||||    
T  13548901 aaagttgtgctagatgacgaattcac-aaaaccaacaaaagaaaggtgaaa-atatgtgaaaaattacttatttaactaaaagagaaagagaaacaattc 13548998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 13740673 - 13740731
Alignment:
Q  12 agatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||| |||||||| ||||||||||||||||||| |||| |||| ||||| |||||||||    
T  13740673 agatgacgaaatcacaaaaacaaacgaaagaaaacagaaa-atatatgaaa-tcacttatt 13740731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 15261476 - 15261524
Alignment:
Q  64 tcacttatttttctaaaagagaaagaaaaacaattcagatggatgattt 112  Q
    ||||||||||  |||||||||||||||||||||||| || || ||||||    
T  15261476 tcacttatttagctaaaagagaaagaaaaacaattcggaagggtgattt 15261524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 19042568 - 19042600
Alignment:
Q  13 gatgatgaaatcaccaaaacaaacgaaagaaaa 45  Q
    |||||||||||||| ||||||||||||||||||    
T  19042568 gatgatgaaatcacaaaaacaaacgaaagaaaa 19042600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 39837307 - 39837275
Alignment:
Q  13 gatgatgaaatcaccaaaacaaacgaaagaaaa 45  Q
    |||||||||||||| ||||||||||||||||||    
T  39837307 gatgatgaaatcacaaaaacaaacgaaagaaaa 39837275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 340
Target Start/End: Complemental strand, 36163294 - 36163198
Alignment:
Q  245 ggaagacaagagacaa-ggtaggagcagggtatatgtatgtaggacattgttttgttgtaatgatttatgagcacacatgggaatagaggtaggtac 340  Q
    ||||| |||||||||| |||||||||||  ||| |||||| |||| ||||||||||||| |||||| ||| ||||||||| ||||| |||| |||||    
T  36163294 ggaaggcaagagacaaaggtaggagcagtatatgtgtatggaggatattgttttgttgtgatgattaatgggcacacatgtgaatataggtgggtac 36163198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 14535000 - 14534903
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaa-----agtcacttatttttctaaaagagaaagaaaaacaattcagatggatgattt 112  Q
    |||||||| ||||||||||||||||||| |||| |||||||||     | ||||||||||  |||||||| |||||||||||||||||| || ||||||    
T  14535000 gaaatcacaaaaacaaacgaaagaaaactgaaa-atatgtgaacccttaatcacttatttaactaaaagaaaaagaaaaacaattcagacggttgattt 14534903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 374395 - 374304
Alignment:
Q  8 tgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattca 100  Q
    |||||||  |||||||||| ||||||||| ||| ||||| |||| ||| |||||| ||| ||||||  ||||||||||||||| |||||||||    
T  374395 tgctagacaatgaaatcacaaaaacaaacaaaataaaactgaaa-atacgtgaaaatcatttatttaactaaaagagaaagaataacaattca 374304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 17523524 - 17523621
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaag-tcacttatttttctaaaagagaaagaaaaacaattc 99  Q
    |||||||| ||||| || |||||||| ||||| ||||||||||| | | || ||||||||||  ||| ||||||  ||||||||||||||||||||||||    
T  17523524 aaagttgtactagacgacgaaatcac-aaaaccaacgaaagaaagctgtaa-atatgtgaaaaatcatttatttaactaaaagagaaagaaaaacaattc 17523621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 12891777 - 12891726
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  12891777 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 12891726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 17331429 - 17331378
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  17331429 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 17331378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 28040730 - 28040679
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  28040730 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 28040679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 33164488 - 33164539
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  33164488 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 33164539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 39179848 - 39179899
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  39179848 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 39179899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 26742484 - 26742575
Alignment:
Q  20 aaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcagatggatgatttt 113  Q
    ||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    ||| | ||||||||||||||||| ||||| |||||||    
T  26742484 aaatcacgaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttattcaattaagatagaaagaaaaacaattcggatgggtgatttt 26742575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 51958471 - 51958357
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaa-aaacaattc 99  Q
    |||||||||| ||| || || ||||| |||| |||||||| ||||| |||| |||| | ||| ||||||||||  ||||||||| || || |||||||||    
T  51958471 aaagttgtgcgagacgacgagatcacaaaaataaacgaaataaaactgaaaaatatataaaaatcacttatttaactaaaagaggaaaaataaacaattc 51958372  T
Q  100 agatggatgattttg 114  Q
    |||||  ||||||||    
T  51958371 agatgagtgattttg 51958357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 6882057 - 6882005
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttattt 73  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||    
T  6882057 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttattt 6882005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 12717137 - 12717190
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttattt 73  Q
    |||||||| ||||||||||||||||||| |||| ||||||| || ||||||||||    
T  12717137 gaaatcacaaaaacaaacgaaagaaaactgaaa-atatgtggaaatcacttattt 12717190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 6911781 - 6911730
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  6911781 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 6911730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 29268797 - 29268848
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  29268797 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 29268848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 30202139 - 30202088
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  30202139 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 30202088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 43244402 - 43244493
Alignment:
Q  20 aaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcagatggatgatttt 113  Q
    ||||||| |||||||||||||||||| ||||| |||||||||| |||||||||    ||  | |||| ||||||||||||||| || |||||||    
T  43244402 aaatcacaaaaacaaacgaaagaaaatcgaaa-atatgtgaaa-tcacttattcaattaggatagaaggaaaaacaattcagaggggtgatttt 43244493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 26674480 - 26674422
Alignment:
Q  12 agatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||| |||||||| |||||||||||||||||| | ||| |||||||||| |||||||||    
T  26674480 agatgacgaaatcacaaaaacaaacgaaagaaaa-caaaaaatatgtgaaa-tcacttatt 26674422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 39837703 - 39837645
Alignment:
Q  12 agatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||| |||||||  ||||||||||||||||||| |||| |||||||||| |||||||||    
T  39837703 agatgacgaaatcaaaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 39837645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 14810723 - 14810609
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaag-tcacttatttttctaaaagagaaagaaaaacaattc 99  Q
    ||||| || ||||| || |||||||| ||||| ||||||||||| | | || ||||||||||  ||||||||||  ||||||||||||||||||||||||    
T  14810723 aaagtcgtactagacgacgaaatcac-aaaaccaacgaaagaaagctgtaa-atatgtgaaaaatcacttatttaactaaaagagaaagaaaaacaattc 14810626  T
Q  100 agatggatgattttgga 116  Q
    | |||| | ||||||||    
T  14810625 aaatgggtaattttgga 14810609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 15257718 - 15257604
Alignment:
Q  1 aaagttgtgctagatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaag-tcacttatttttctaaaagagaaagaaaaacaattc 99  Q
    ||||| || ||||| || |||||||| ||||| ||||||||||| | | || ||||||||||  ||||||||||  ||||||||||||||||||||||||    
T  15257718 aaagtcgtactagacgacgaaatcac-aaaaccaacgaaagaaagctgtaa-atatgtgaaaaatcacttatttaactaaaagagaaagaaaaacaattc 15257621  T
Q  100 agatggatgattttgga 116  Q
    | |||| | ||||||||    
T  15257620 aaatgggtaattttgga 15257604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 43256570 - 43256649
Alignment:
Q  20 aaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattca 100  Q
    ||||||| ||||||| |||| |||||| |||| |||||||| | ||||||||||  |||||||||||| ||||||||||||    
T  43256570 aaatcacaaaaacaagcgaa-gaaaactgaaaaatatgtgataatcacttatttaactaaaagagaaataaaaacaattca 43256649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 27705090 - 27705171
Alignment:
Q  20 aaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcaga 102  Q
    ||||||| ||| ||||||||||| ||   ||| |||| ||||| ||||||||||  |||||||||||||||||||||||||||    
T  27705090 aaatcacaaaatcaaacgaaagagaataaaaa-atatatgaaaatcacttatttgactaaaagagaaagaaaaacaattcaga 27705171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 15674625 - 15674683
Alignment:
Q  12 agatgatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||| |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  15674625 agatgacgaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 15674683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 26161084 - 26161039
Alignment:
Q  16 gatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaa 62  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||||    
T  26161084 gatgaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa 26161039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 39532995 - 39533087
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcagatggatgatttt 113  Q
    |||||||| ||||||||| ||||||||| |||| |||||||||| |||||||||    ||| | |||| |||||||||||||||  |||||||||    
T  39532995 gaaatcacgaaaacaaacaaaagaaaacagaaa-atatgtgaaa-tcacttattcaattaagatagaaggaaaaacaattcagagagatgatttt 39533087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 10094542 - 10094491
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  10094542 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 10094491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 39990197 - 39990272
Alignment:
Q  22 atcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattc 99  Q
    ||||| ||||||||||||||||||| |||| |||||||||| |||| |||||  || ||||||||||  |||||||||    
T  39990197 atcacgaaaacaaacgaaagaaaactgaaa-atatgtgaaaatcacctatttaact-aaagagaaagttaaacaattc 39990272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 42603789 - 42603840
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  42603789 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 42603840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 43847171 - 43847120
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    ||||||||||||||||||||| |||||| |||| |||||||||| |||||||||    
T  43847171 gaaatcaccaaaacaaacgaaggaaaacagaaa-atatgtgaaa-tcacttatt 43847120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 28664933 - 28664983
Alignment:
Q  20 aaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    ||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  28664933 aaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 28664983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 45457573 - 45457627
Alignment:
Q  16 gatgaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    ||||||||||| |||||||||||||||||||  ||| |||||||||| |||||||||    
T  45457573 gatgaaatcacgaaaacaaacgaaagaaaacataaa-atatgtgaaa-tcacttatt 45457627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 9044100 - 9044193
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcagatggatgattttg 114  Q
    |||||||| |||||||| |||  ||||| |||| |||||||||| ||||||||||  |||||||||||| ||||||||||| ||| ||| ||||||    
T  9044100 gaaatcacaaaaacaaatgaataaaaactgaaa-atatgtgaaaatcacttatttg-ctaaaagagaaacaaaaacaattcggatagataattttg 9044193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 2304830 - 2304881
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  2304830 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 2304881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 12481390 - 12481441
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  12481390 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 12481441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 12201749 - 12201705
Alignment:
Q  54 tatgtgaaagtcacttatttttctaaaagagaaagaaaaacaatt 98  Q
    ||||||||| ||||||| ||| ||||||||||||||| |||||||    
T  12201749 tatgtgaaaatcacttactttgctaaaagagaaagaataacaatt 12201705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 16277295 - 16277263
Alignment:
Q  13 gatgatgaaatcaccaaaacaaacgaaagaaaa 45  Q
    |||||||||||||| ||||||||||||||||||    
T  16277295 gatgatgaaatcacaaaaacaaacgaaagaaaa 16277263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 28317529 - 28317561
Alignment:
Q  13 gatgatgaaatcaccaaaacaaacgaaagaaaa 45  Q
    |||||||||||||| ||||||||||||||||||    
T  28317529 gatgatgaaatcacaaaaacaaacgaaagaaaa 28317561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 1106 - 1157
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  1106 gaaatcacaaaaacaaacgaaagaaaactgaaa-atatgtgaaa-tcacttatt 1157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 7144 - 7195
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  7144 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 7195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 6238 - 6187
Alignment:
Q  19 gaaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatt 72  Q
    |||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  6238 gaaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttatt 6187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 35192 - 35132
Alignment:
Q  12 agatgatgaaatcaccaaaacaaacgaaagaaaaccg-aaagatatgtgaaagtcacttatt 72  Q
    ||||||||||||| | ||||||||||||||||||| | ||| |||||||||| |||||||||    
T  35192 agatgatgaaatcgcaaaaacaaacgaaagaaaacagaaaatatatgtgaaa-tcacttatt 35132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 74264 - 74173
Alignment:
Q  20 aaatcaccaaaacaaacgaaagaaaaccgaaagatatgtgaaagtcacttatttttctaaaagagaaagaaaaacaattcagatggatgatttt 113  Q
    ||||||| ||||||||||||||||||| |||| |||||||||| |||||||||    ||  | |||| |||||||||||| ||||| |||||||    
T  74264 aaatcacaaaaacaaacgaaagaaaacagaaa-atatgtgaaa-tcacttattcaattaggatagaaggaaaaacaattcggatgggtgatttt 74173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 108635 - 108667
Alignment:
Q  13 gatgatgaaatcaccaaaacaaacgaaagaaaa 45  Q
    |||||||||||||| ||||||||||||||||||    
T  108635 gatgatgaaatcacaaaaacaaacgaaagaaaa 108667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University