View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_24 (Length: 365)
Name: NF10317_low_24
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 13508525 - 13508318
Alignment:
| Q |
17 |
acaatagaggtggtttcatcctcaaaattgaaaacacccattatgaattatataatatgctaacttgctagtgaaagaagtattagttagtaaatataat |
116 |
Q |
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| T |
13508525 |
acaatagaggtggtttcatcctcaaaattgaaaacacccattatgaattatataatatgctaacttgctagtgaaagaagtattagttagtaaatataat |
13508426 |
T |
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| Q |
117 |
taagaagttgcttaatttgttgtgtggtttatgtggagctgagtctagtatttatagtaactgaagatgtattgtttagacctatatgatgtttaataca |
216 |
Q |
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| T |
13508425 |
taagaagttgcttaatttgttgtgtggtttatgtggagttgagtctagtatttatagtaactgaagatgtattgtttagacct-----atgtttaataca |
13508331 |
T |
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| Q |
217 |
aggtcgttaggcc |
229 |
Q |
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||||||||||||| |
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| T |
13508330 |
aggtcgttaggcc |
13508318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 13508259 - 13508211
Alignment:
| Q |
288 |
gttaaaaaccaatttggactcacaaaattcttgaatatactattcatta |
336 |
Q |
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| T |
13508259 |
gttaaaaacctatttggactcacaaaattcttgaatatactattcatta |
13508211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 13514773 - 13514737
Alignment:
| Q |
21 |
tagaggtggtttcatcctcaaaattgaaaacacccat |
57 |
Q |
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| T |
13514773 |
tagaggtggtttcatcctcaaaattgaacacacccat |
13514737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 13500807 - 13500756
Alignment:
| Q |
17 |
acaatagaggtggtttcatcctcaaaattgaaaacacccattatgaattata |
68 |
Q |
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| T |
13500807 |
acaacagaggtggtttcttcctcaaaattgatgacacccatgatgaattata |
13500756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 13483960 - 13483927
Alignment:
| Q |
164 |
gtatttatagtaactgaagatgtattgtttagac |
197 |
Q |
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| T |
13483960 |
gtatttataggaactgaagatgtattgtttagac |
13483927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 13484100 - 13484055
Alignment:
| Q |
17 |
acaatagaggtggtttcatcctcaaaattgaaaacacccattatga |
62 |
Q |
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| T |
13484100 |
acaatagatgtggtttcatcctcaaagttgaagacacccatgatga |
13484055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 13489825 - 13489780
Alignment:
| Q |
17 |
acaatagaggtggtttcatcctcaaaattgaaaacacccattatga |
62 |
Q |
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|||||||| ||||||||||||||||| ||||| |||||||| |||| |
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| T |
13489825 |
acaatagatgtggtttcatcctcaaagttgaagacacccatgatga |
13489780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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