View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_25 (Length: 347)
Name: NF10317_low_25
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 31360705 - 31360584
Alignment:
| Q |
1 |
gcactcataatatatcggtgtttatcttattgtttcacaggattctgaggaactgcaacatcagtggaaaactacatgattatattgggaatatggcatc |
100 |
Q |
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||||||||||||||| | ||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| || |
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| T |
31360705 |
gcactcataatatattgttgtctatctttttgtttcacaggattctgaggaactgcaacatcaatggaaaactactcgattatcttgggaatatgggatt |
31360606 |
T |
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| Q |
101 |
attaaaacacttgtaattgctt |
122 |
Q |
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| T |
31360605 |
attaaaacacttgtaattgctt |
31360584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 31256054 - 31255937
Alignment:
| Q |
1 |
gcactcataatatatcggtgtttatcttattgtttcacaggattctgaggaactgcaacatcagtggaaaactacatgattatattgggaatatggcatc |
100 |
Q |
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||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| |||||||| ||| |||||| || | |
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| T |
31256054 |
gcactgataatatatcgttgtctatcttaatgtttcacaggattctgaggaactgcaacatcaacgggaaactgaatgattatcttgcgaatataacaac |
31255955 |
T |
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| Q |
101 |
attaaaacacttgtaatt |
118 |
Q |
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|||||||||||||||||| |
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| T |
31255954 |
attaaaacacttgtaatt |
31255937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 31293062 - 31292951
Alignment:
| Q |
7 |
ataatatatcggtgtttatcttattgtttcacaggattctgaggaactgcaacatcagtggaaaactacatgattatattgggaatatggcatcattaaa |
106 |
Q |
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| T |
31293062 |
ataatatatcgttgtctttcttattgtttcacaggattctgaggaactgcaaaatcaacggaacactacctaaatatcttgggactataccaacattaaa |
31292963 |
T |
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| Q |
107 |
acacttgtaatt |
118 |
Q |
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| T |
31292962 |
gcacttgtaatt |
31292951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 31360512 - 31360449
Alignment:
| Q |
134 |
acatcattttggataatctaatttcattgcataatactgaaatacattagggaccgttaacttt |
197 |
Q |
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| T |
31360512 |
acatcattttgcataatataatttcgttgcataatactgaaatgcattagggatcgttaacttt |
31360449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 31375032 - 31374913
Alignment:
| Q |
1 |
gcactcataatatatcggtgtttatcttattgtttcacaggattctgaggaactgcaacatcagtggaaaactacatgattatattgggaatatggcatc |
100 |
Q |
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|||||||||| || ||| ||| |||||||||| ||||||||||||||||||| ||||| |||| |||| ||||| || ||| ||||||||||| || | |
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| T |
31375032 |
gcactcataaaatgtcgctgtctatcttattggttcacaggattctgaggaattgcaatatcaacggaacactaccggaatatcttgggaatatgacaac |
31374933 |
T |
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| Q |
101 |
attaaaacacttgtaattgc |
120 |
Q |
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||||| | ||||||||||| |
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| T |
31374932 |
attaattcgcttgtaattgc |
31374913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 31307487 - 31307423
Alignment:
| Q |
5 |
tcataatatatcggtgtttatcttattgtttcacaggattctgaggaactgcaacatcagtggaa |
69 |
Q |
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|
||||||||||||| ||| ||||||||||||||| ||| |||||||||| |||||||||| ||||| |
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| T |
31307487 |
tcataatatatcgttgtctatcttattgtttcatagggttctgaggaattgcaacatcaatggaa |
31307423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 31419087 - 31419198
Alignment:
| Q |
5 |
tcataatatatcggtgtttatcttattgtttcacaggattctgaggaactgcaacatcagtggaaaactacatgattatattgggaatatggcatcatta |
104 |
Q |
| |
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|||||||||| | ||| |||||||||||||||||||||||| ||||| |||||||||| |||| |||| ||| || || ||| ||| || ||||| |
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| T |
31419087 |
tcataatatacagttgtctatcttattgtttcacaggattcttaggaattgcaacatcaacggaacgctacctgaaaatcttaggactataacaacatta |
31419186 |
T |
|
| Q |
105 |
aaacacttgtaa |
116 |
Q |
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|||||||||||| |
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| T |
31419187 |
aaacacttgtaa |
31419198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 31281959 - 31281865
Alignment:
| Q |
23 |
tatcttattgtttcacaggattctgaggaactgcaacatcagtggaaaactacatgattatattgggaatatggcatcattaaaacacttgtaat |
117 |
Q |
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||||||||||||||||||| |||||||||| ||||| |||| |||| |||| | | ||| |||||| |||| || ||||||||||||||||| |
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| T |
31281959 |
tatcttattgtttcacagggttctgaggaattgcaatatcaacggaacactaactcaatatcttgggattatgtcaaaattaaaacacttgtaat |
31281865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 30006659 - 30006611
Alignment:
| Q |
214 |
ttattttcacttcaactgataaaaacaagaaaatatacatcaaatattt |
262 |
Q |
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||||||||||||||||| ||||| | | ||||||||| ||||||||||| |
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| T |
30006659 |
ttattttcacttcaactaataaacataggaaaatatagatcaaatattt |
30006611 |
T |
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