View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_28 (Length: 332)
Name: NF10317_low_28
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 4189310 - 4189620
Alignment:
| Q |
1 |
aatagaagctagaaaggaaaacaaaataagatacacgattgcatatctttgtgacttggtctacatgaagttgaatcaagaactctcaactttgtttatg |
100 |
Q |
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| T |
4189310 |
aatagaagctagaaaggaaaacaaaataagatacacgattgcatatctttgtgacttggtctacatgaagttgaatcaagaactctcaactttgtttatg |
4189409 |
T |
|
| Q |
101 |
caagaagcagtgcagcaccggcaaagaatggtagcatgaaaaagctgcttctgcgaacaaccgcgttgcttggacttgaagcaactgggttatcagacat |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4189410 |
caagaagcagtgcagcaccagcaaagaatggtagcatgaaaaagctgcttctgcgaacaaccgcgttgcttggacttgaagcaactggattatcagacat |
4189509 |
T |
|
| Q |
201 |
tgattctccggtggaaggtgacggtgaagaagctggagatggtgaagcagcagtagggaaaggtgggctcatacttggactcatgttcatgcttgggctc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4189510 |
tgattctccggtggaaggtgacggtgaagaagctggagatggtgaagcatcagtagggaaaggtgggctcatacttggactcatgttcatgcttgggctc |
4189609 |
T |
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| Q |
301 |
atgctcgggct |
311 |
Q |
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||||||||||| |
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| T |
4189610 |
atgctcgggct |
4189620 |
T |
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