View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_29 (Length: 331)
Name: NF10317_low_29
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 34261771 - 34262083
Alignment:
| Q |
1 |
acacggaaaggtggtaatagaaaagagcaaaatctgttgggaaaatgagaagaaatatataaaacaggatagcgtagaaagcgggtgttgaaatgaatga |
100 |
Q |
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| T |
34261771 |
acacggaaaggtggtaatagaaaagagcaaaatctgttgggaaaatgagaagaaatatataaaacaggttagcgtagaaagcgggtgttgaaatgaatga |
34261870 |
T |
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| Q |
101 |
acaagcgtgtgaaactagcaaggaactaacgggtaagaactgaagaggagtgttattgtttaagtggcaaaatagtaaatgtaacaataaatgcaatggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34261871 |
acaagcgtgtgaaactagcaaggaactaacgggtaagaactgaagaggagtgttattgtttaagtggcaaaatagtaaatgtaacaataaatgcaatggg |
34261970 |
T |
|
| Q |
201 |
gtgttagacacgccatggcttgtgaatggagccaaaatgagttaagggaacataacataattacataactttgagtttgatttgatgattagtgttgtgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34261971 |
gtgttagacacgccatggcttgtgaatggagccaaaatgagttaagggaacataacataattacataactttgagtttgatttgatgattagtgttgtgg |
34262070 |
T |
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| Q |
301 |
cgtgaggaagagt |
313 |
Q |
| |
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||||||||||||| |
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| T |
34262071 |
cgtgaggaagagt |
34262083 |
T |
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