View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_30 (Length: 326)
Name: NF10317_low_30
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 5601528 - 5601239
Alignment:
| Q |
1 |
aaatagcatttagtattatgtcatgagtcagctatgattaagaaagttcatagtacatagccaaacaatgttgagaactaaaggacaaccacacgagatt |
100 |
Q |
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| T |
5601528 |
aaatagcatttagtattatgtcatgagtcagctatgattgagaaagttcatagtacatagccaaacaatgttgagaactaaaggacaaccacacgagagt |
5601429 |
T |
|
| Q |
101 |
tgataaaaggggttgaaccacaaaaatcttatacctaaatgaaattgcaaacattannnnnnncatacnnnnnnngctatatatgtgtttgaactacaac |
200 |
Q |
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| T |
5601428 |
tgataaaaggggttgaaccacaaaaatcttatacctaaatgaaattgctaacatta-ttttttcatac-aaaaaagctatatatgtgtttgaactacaac |
5601331 |
T |
|
| Q |
201 |
catgtttcaaaagaataaaaaacgataaacacaaacaactaacatgatgtttagttagtttacgtcatataattagtggcaatcaacctatc |
292 |
Q |
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| T |
5601330 |
catgtttcaaaagaataaaaaacgataaacacaaacaactaacatgatgtttagttagtttacgtcatataattagtggcaatcaatctatc |
5601239 |
T |
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