View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_31 (Length: 311)
Name: NF10317_low_31
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_31 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 1162785 - 1163094
Alignment:
| Q |
1 |
gacgcatatgagaagcagccacactatactttaatctatttatgtagagttgaaaatctcctaataattataaagatggtttgccagttttgcttcgtac |
100 |
Q |
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| T |
1162785 |
gacgcatatgagaagcagccacactatactttaatctatttatgtagagttgaaaatctcctaataattataaagatagtttgccagttttgcttcgtat |
1162884 |
T |
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| Q |
101 |
gataggtattagattaatcaaaactcaagtacaaatggagtgaactatttgtttataacaaacaatataataaaaacagatccacaaaatatttacatcc |
200 |
Q |
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| T |
1162885 |
gataggtattagattaatcaaaactcaagtacaaatggagtgaactatttgtttataacaaacaatataataaaaacagatccacaaaatatttacatcc |
1162984 |
T |
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| Q |
201 |
atccagcacatgaatgaatcccatgtaaaaggtagtactataccacaaacaaacaactgtttaaaatttacgaaacagatatttacatagcagagaagat |
300 |
Q |
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| T |
1162985 |
atccagcacatgaacgaat-ccatataaaaggtagtactataccacaaacaaacaactgtttaaaatttacgaaacagatatttacatagcagagaagat |
1163083 |
T |
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| Q |
301 |
caaaccaatgc |
311 |
Q |
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| T |
1163084 |
caaaccaatgc |
1163094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 40412338 - 40412251
Alignment:
| Q |
70 |
ataaagatggtttgccagttttgcttcgtacgataggtattagattaatcaaaactcaagtacaaatggagtgaactatttgtttata |
157 |
Q |
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| T |
40412338 |
ataaagatggtttgccagttttgcttcttacgatacttagtagattaatcagaactcaagaacaaatagagtgaactatttatttata |
40412251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 39400746 - 39400652
Alignment:
| Q |
76 |
atggtttgccagttttgcttcgtacgataggtattagattaatcaaaactcaagtacaaatggagtgaactatttgtttataacaaacaatataa |
170 |
Q |
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| T |
39400746 |
atggtttgctagttttgcttcttacaatacgcaagagattaatcaaagctcaagtagaaatagagtgaaccatttatttataacaaacaatataa |
39400652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 40419069 - 40419007
Alignment:
| Q |
249 |
acaaacaactgtttaaaatttacgaaacagatatttacatagcagagaagatcaaaccaatgc |
311 |
Q |
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| T |
40419069 |
acaaataactgttaaagatttatgaaacagatatttacgtagcagagaagatcgaaccaatgc |
40419007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 40412409 - 40412365
Alignment:
| Q |
7 |
tatgagaagcagccacactatactttaatctatttatgtagagtt |
51 |
Q |
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| T |
40412409 |
tatgagaagcagccacactatactttcaactatttatgtaaagtt |
40412365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 38988459 - 38988414
Alignment:
| Q |
110 |
tagattaatcaaaactcaagtacaaatggagtgaactatttgttta |
155 |
Q |
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| T |
38988459 |
tagattaatcagaactcaagaacaaatagagtgaactatttattta |
38988414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 40419225 - 40419145
Alignment:
| Q |
70 |
ataaagatggtttgccagttttgcttcgtacgataggtattagattaatcaaaactcaagtacaaatggagtgaactattt |
150 |
Q |
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| T |
40419225 |
ataaagatggtttgctagttttacttcttagtgtatgtaatagattaatcaaagctcaagtccaaaaagagtaaactattt |
40419145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 25911483 - 25911614
Alignment:
| Q |
170 |
ataaaaacagatccacaaaatatttacatccatccagcacatgaatgaatcccatgtaaaaggtagtactataccacaaacaaacaactgtttaaaattt |
269 |
Q |
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| T |
25911483 |
ataataacagatccccaaaatattt----caatccagcacaggaatgaatcc-atataaaaggtaatacgatactacaa----acaactgttaaagattt |
25911573 |
T |
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| Q |
270 |
acgaaacagatatttacatagcagagaagatcaaaccaatg |
310 |
Q |
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| T |
25911574 |
atgaaacagatatttacatagcagagaagatcaaaccaatg |
25911614 |
T |
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