View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_33 (Length: 304)
Name: NF10317_low_33
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 41705410 - 41705144
Alignment:
| Q |
17 |
tggtggtggtgtttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctattatggagagtgagt |
116 |
Q |
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| T |
41705410 |
tggtggtggtgtttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctatcatggagagtgagt |
41705311 |
T |
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| Q |
117 |
gtgttagaggtaatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataacaggggagaagccatttggttaaaca--gt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
41705310 |
gtgttagaggtaatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataacaggggagaagccatttggttaaacagggt |
41705211 |
T |
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| Q |
215 |
atttgnnnnnnngtgttggaacttgaatacagagagaggagaagagtttttgaatttgtagatggagtg |
283 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41705210 |
atttgtttttttgtgttggaacttgaatac--agagaggagaagagtttttgaatttgtagatggagtg |
41705144 |
T |
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