View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_34 (Length: 303)
Name: NF10317_low_34
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 31178340 - 31178613
Alignment:
| Q |
1 |
ttcttttttagtagctttgatttgttcaagtgttaaatgtgtattgtgtcacacacactcaaagataattgggtttgcaacaaaagtggtaccttcggtg |
100 |
Q |
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| T |
31178340 |
ttcttttttagtagctttgatttgttcaagtgttaaatgtgtattgtgtcacacacactcaaagataattgggtttgcaacaaaagtggtaccttcggtg |
31178439 |
T |
|
| Q |
101 |
atttatatatagtggtgaacaaggaatcttcaatagtggatcaaaatagtaattcaccaccacgattggaatagaaatgttttgtacacattcaggttag |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
31178440 |
atttatatatagttgtgaacaaggaatcttcaatagtggatcaaaatagtaa-tcaccaccacgattggaatagaaatgttttgtgcacattcagtttag |
31178538 |
T |
|
| Q |
201 |
agaaatgatatttaaacgaccatttttaaacgatttttgcgataactctttttgatatttgtattgtacttttat |
275 |
Q |
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||||||||||||||||| | |||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
31178539 |
agaaatgatatttaaacaatcatttttaaatgatttttgtgataactctttttgatatttttattgtacttttat |
31178613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 41750114 - 41750146
Alignment:
| Q |
199 |
agagaaatgatatttaaacgaccatttttaaac |
231 |
Q |
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| T |
41750114 |
agagaaatgatatttaaacaaccatttttaaac |
41750146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 24468358 - 24468310
Alignment:
| Q |
199 |
agagaaatgatatttaaacgaccatttttaaacgatttttgcgataact |
247 |
Q |
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||||||||||||||| ||| ||||||||||||| | ||||| ||||||| |
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| T |
24468358 |
agagaaatgatatttgaacaaccatttttaaacaacttttgtgataact |
24468310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 38426432 - 38426384
Alignment:
| Q |
199 |
agagaaatgatatttaaacgaccatttttaaacgatttttgcgataact |
247 |
Q |
| |
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||||||||||||||| ||| | ||||||||||||||||||||| |||| |
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| T |
38426432 |
agagaaatgatatttgaacaattatttttaaacgatttttgcgacaact |
38426384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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