View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_35 (Length: 300)
Name: NF10317_low_35
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 1787445 - 1787168
Alignment:
| Q |
1 |
cgaatgcaatccaacgacttgaatttatagaaattaagaaattcgtcccaacaatcttaaaaacacagtttttacatactcttgttcaatggaaaggatt |
100 |
Q |
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| T |
1787445 |
cgaatgcaatccaacgacttgaatttatagaaattaagaaattcgtcccaacaatcttaaaaacacagtttttacatactcttgttcaatggaaaggatt |
1787346 |
T |
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| Q |
101 |
ttactttcacaagattttaattaatttttaacttgcttgatttgtaaacatgaaaatgggccattttgtaaagatt-nnnnnnnnntagggcgttcttcc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1787345 |
ttactttcacaagattttaattaatttttaacttgcttgatttgtaaacatgaaaatgggccattttgtaaagattaaaaaaaaaatagggcgttcttcc |
1787246 |
T |
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| Q |
200 |
ggtgtttcgatccgagtagaggtgctatggaactcttttcttggttaataaataatctaaaacttggatctatagcat |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1787245 |
ggtgtttcgatccgagtagaggtgctatggaactcttttcttggttaataaataatctaaaacttggatctatagcat |
1787168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 46280464 - 46280196
Alignment:
| Q |
1 |
cgaatgcaatccaacgacttgaatttatagaaattaagaaattcgtcccaacaatcttaaaaacacagtttttacatactcttgttcaatggaaaggatt |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46280464 |
cgaatgcaatccaacgatttgaatttatagaaattaagaaattcgtcccaacaatcttaaaaacacagtttttacatactcttgttcaatggaaaagatt |
46280365 |
T |
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| Q |
101 |
ttactttcacaagattttaattaatttttaacttgcttgatttgtaaacatgaaaatgggccattttgtaaagattnnnnnnnnntagggcgttcttccg |
200 |
Q |
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| T |
46280364 |
ttactttcacaagattttaattaatttttaacttgcttgatttgtaaacatgaaaatgggccattttgtgaagattaaaaaaaaataggg--------ca |
46280273 |
T |
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| Q |
201 |
gtgtttcgatccgagtagaggtgctatggaactcttttcttggttaataaataatctaaaacttggatctatagcat |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
46280272 |
gtgtttcgatccgagtagaggtgctatggaactcttttcttggttaataaataatatgaaacttggatctatagcat |
46280196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 61 - 270
Target Start/End: Original strand, 53283496 - 53283708
Alignment:
| Q |
61 |
aaacacagtttttacatactcttgttcaatggaaaggattttactttcacaagattttaattaatttttaacttgcttgatttgtaaacatgaaaatggg |
160 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53283496 |
aaacacagtttttacatactcttgttcaatggaaatgattttcctttcacaagattttaattaatttttaacttgcttgatttgtaaacatgaaaacggg |
53283595 |
T |
|
| Q |
161 |
ccattttgtaaagattnnnnnnnnntagggcg----ttcttccggtgtttcgatccgagtagaggtgctatggaactcttttcttggttaataaataatc |
256 |
Q |
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| T |
53283596 |
ccattttgtaaagatt-aaaaaaaatagggcgttctttcttccggtgttttgatccgagtagaggtgtcatggaactcttttcttggttaataaataatc |
53283694 |
T |
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| Q |
257 |
taaaacttggatct |
270 |
Q |
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| T |
53283695 |
tgaaacttggatct |
53283708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 30779204 - 30779147
Alignment:
| Q |
1 |
cgaatgcaatccaacgacttgaatttatagaaattaagaaattcgtcccaacaatctt |
58 |
Q |
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||||||||||||||||| | ||||||||||| ||||||||||||||| | ||||||| |
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| T |
30779204 |
cgaatgcaatccaacgattcaaatttatagaagttaagaaattcgtcctagcaatctt |
30779147 |
T |
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