View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_40 (Length: 273)
Name: NF10317_low_40
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 25362918 - 25363167
Alignment:
| Q |
12 |
caagaacaacaatctacattaaccattgatcatacataaaaataaaaccaatttttagaaaagaatcattcacacactaatttgttccgaaaacaccaaa |
111 |
Q |
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| T |
25362918 |
caagaacaacaatctacattaaccattgatcatacataaaaataaaaccaatttttagaaaagaatcattcacacactaatttgttccgaaaacaccaaa |
25363017 |
T |
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| Q |
112 |
tttctctatttcacaccgtaatctctgaagttggtagacatgcatgaagaaaggaatcaaatggagctcacactaggagggtttttgatgagaatgagat |
211 |
Q |
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| T |
25363018 |
tttctttatttcacaccgtaatctctgaagttggtagacatgcatgaagaaaggaatcaaatggaactcacactaggaggg--tttgatgagaatgagat |
25363115 |
T |
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| Q |
212 |
tgttcctttttccttgctgctttctctacaatttttcatttcctcgcctatg |
263 |
Q |
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| T |
25363116 |
tgttcctttttccttgctgctttcactacaatttttcatttcctcgcctatg |
25363167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 173
Target Start/End: Original strand, 25360787 - 25360878
Alignment:
| Q |
80 |
ttcacacactaatttgttccgaaaacaccaaatttctctatttcacaccgtaatctctgaagttggtagacatgcatgaagaaaggaatcaaat |
173 |
Q |
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| T |
25360787 |
ttcacacccttaattgatcccaaaaccccaaatttctctatttcataccctaatcta--aaattgatagacatgcatgaagaaaggaatcaaat |
25360878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 25359848 - 25359914
Alignment:
| Q |
107 |
ccaaatttctctatttcacaccgtaatctctgaagttggtagacatgcatgaagaaaggaatcaaat |
173 |
Q |
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| T |
25359848 |
ccaaatttctttgtttcataccctaatctctgaaattgctagacatgcataaagaaaggaattaaat |
25359914 |
T |
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