View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_41 (Length: 262)
Name: NF10317_low_41
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 4759963 - 4759713
Alignment:
| Q |
1 |
tctcttgcttcgcttagcaacctgtccacttatcagtaactattagcaatactcgacaaactagttgaaagtctgaatttcatggatttgttgaatatta |
100 |
Q |
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| T |
4759963 |
tctcttgcttcgcttagcaacctgtccacttatcagtaactattagctatactcgacaaactagttgaaagtctgaatttcatggatttgttgaatatta |
4759864 |
T |
|
| Q |
101 |
gtttacatt----tannnnnnnataaaatatttctttacttgattaatgagtaaaagaannnnnnnnccacttatctagttaaatgtaatactttaccca |
196 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4759863 |
gtttacatttttatttttttttataaaatatttctttacttgattaatgagtaaaagaattttttttccacttatctagttaaatgtaatactttaccca |
4759764 |
T |
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| Q |
197 |
atagaagagatcaagtcaagtgagatgacttaccttaccattcgttgagat |
247 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4759763 |
atagaagagatcaagtcaagtgagatgagttaccttaccattcgttgagat |
4759713 |
T |
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