View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10317_low_43 (Length: 254)
Name: NF10317_low_43
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_43 |
 | |
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| [»] scaffold0513 (1 HSPs) |
| |
|
| [»] scaffold0177 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold1407 (1 HSPs) |
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| [»] chr7 (6 HSPs) |
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| [»] scaffold0226 (1 HSPs) |
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|
| [»] scaffold0001 (1 HSPs) |
| |
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| [»] scaffold0035 (2 HSPs) |
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| [»] chr4 (11 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0158 (2 HSPs) |
| | |
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| [»] scaffold0029 (2 HSPs) |
| | |
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| [»] scaffold0059 (1 HSPs) |
| | |
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| [»] chr5 (5 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0453 (1 HSPs) |
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| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0513 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0513
Description:
Target: scaffold0513; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 6325 - 6086
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6325 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
6226 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6225 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttggtgcttgctaaattgtattttattattataacatgacaatattttcacgt |
6126 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6125 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
6086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 33499 - 33260
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
33400 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33399 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttggtgcttgctaaattgtattttattattataacatgacaatattttcacgt |
33300 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33299 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
33260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 18486788 - 18487027
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18486788 |
cacagagaccaatgtcaagtatcgtaattaattgttacgttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgttttt |
18486887 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18486888 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
18486987 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18486988 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
18487027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 18476693 - 18476931
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||| ||||||||| |||| |
|
|
| T |
18476693 |
cacagacaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgacgcagattaatttggttgcaaa-ttgggataataacttgttttt |
18476791 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18476792 |
aattacttttaaatgacgagagcccgaaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacttgacaatattttcacgt |
18476891 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18476892 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
18476931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 333 - 572
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
333 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgccaattaatttggttgcaaaaatgggaaaataacttgatttt |
432 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
433 |
aattacttttaaatgacgagagtccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattatcacgt |
532 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
533 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 15933958 - 15933720
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
15933958 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcagattaatttggttgcaaa-ttgggaaaataacttgttttt |
15933860 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15933859 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
15933760 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15933759 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
15933720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 15942301 - 15942063
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
15942301 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcagattaatttggttgcaaa-ttgggaaaataacttgttttt |
15942203 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15942202 |
aattacttttaaatgacgagagcccgaaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
15942103 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15942102 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
15942063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 7160159 - 7159951
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
7160159 |
cacagagaccaatgtcaagtaccgttaactattgtcacgttgtttatctaaggcgatgcaaattaatttggttgcaaaattggaaaaataacttgttttt |
7160060 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||| || |
|
|
| T |
7160059 |
aattac-tttaaatgacgagagcccggaatatattttgtgtcgaccgttgatgcttgctaaattgcattttattattgtaacaagataatattttcgcgc |
7159961 |
T |
|
| Q |
215 |
gtaaaaagaa |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
7159960 |
gtaaaaagaa |
7159951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 47921036 - 47921256
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
47921036 |
cacagagatcaatgtcaagtaccgttatctattgtcacgttgtttatctaaggcgatgctaattaatttggttgtaaaattgggaaaataacttgtttta |
47921135 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
||||| || | |||||| |||| |||||||||||||| |||| | || | |||| ||| || |||||||||||||||||| |||||||||||| ||| |
|
|
| T |
47921136 |
aattaattct-aatgacaagagaccggaatataattcaagtcgacagtgagtacttgttaagttatattttattattgtaacaggacaatattttcgcgt |
47921234 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaagg |
236 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
47921235 |
ttaaaaagaattaatttaaagg |
47921256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 22075846 - 22075679
Alignment:
| Q |
54 |
ttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataactt-gattttaattacttttaaatgacgagagcccggaatataattcg |
152 |
Q |
| |
|
|||||||||||| ||||| | ||||| ||| |||||||||||| ||||||||||| | ||||||||| |||||| | ||||| |||| |||||||||| |
|
|
| T |
22075846 |
ttgtttatctaatgcgatcctaattagttttgttgcaaaattgagaaaataactttgtttttaattaattttaac-gttgagagaccgggatataattcg |
22075748 |
T |
|
| Q |
153 |
tgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgtgtaaaaa |
221 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||||||| || |||| |||| || ||||||| |
|
|
| T |
22075747 |
cgtcgatttttgatgcttgctaaattgtatcttaatattgtaacaggaaaatactttcgcgcgtaaaaa |
22075679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 3844936 - 3845076
Alignment:
| Q |
54 |
ttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgattttaattacttttaaatgacgagagcccggaatataattcgt |
153 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||| |||||||||| ||||| ||||||| ||||||||||||| |||||||| | || ||||||||||||| |
|
|
| T |
3844936 |
ttgtttatctaaggcggtgctaattagtttgattgcaaaattaggaaattaacttgtttttaattacttt--aatgacgacataccagaatataattcgt |
3845033 |
T |
|
| Q |
154 |
gtcgtccgttgatgcttgctaaattgtattttattattgtaac |
196 |
Q |
| |
|
|| | || | || |||| ||| || |||||||||||| |||| |
|
|
| T |
3845034 |
gtggaccatgtatacttgttaagttatattttattattataac |
3845076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 4869 - 4630
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4869 |
cacagagaccaatgtcaagtatcgtaattaattgttacgttgtttatctaaggcggtgcaaattaatttggttgcaaaattgggaaaataacttgttttt |
4770 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4769 |
aattacttttaaatgacgagagcctgtaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
4670 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4669 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
4630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 187423 - 187185
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
187423 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcagattaatttggttgcaaa-ttgggaaaataacttgctttt |
187325 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
187324 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgttaaattgtattttattattgtaacatgacaatatttttgcgt |
187225 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
187224 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
187185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 86838 - 87076
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
86838 |
cacatagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcagattaatttggttgcaaa-ttgggaaaataacttgttttt |
86936 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86937 |
aattacttttaaatgacgagagcacggaatataatttgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
87036 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
87037 |
gtaaaaagaacaaatctaaaggcaccgtcgactttcgtac |
87076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 96532 - 96770
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
96532 |
cacagagaccagtgtcaagtaccataattaattgttacgttgtttatctaaggcgatgcagattaatttggttgcaaa-ttgggaaaataacttgttttt |
96630 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
96631 |
aattacttttaaatgacgagagctcggaatataatttgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
96730 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
96731 |
gtaaaaagaacaaatctaaaggcaccgtcgactttcgtac |
96770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 14224780 - 14224542
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |||| |
|
|
| T |
14224780 |
cacagagaccaatgtcaagtatcgtaattaattgttacgttgtttatctaaggcgatgcagattaatttggttgcaaa-ttgggaaattaacttgttttt |
14224682 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14224681 |
aattacttttgaatgacgagagcccggaatataattcgtatcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
14224582 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
14224581 |
gtaaatattgcaaatttaaaggcaccgtcgactttcgtac |
14224542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 14234875 - 14234637
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |||| |
|
|
| T |
14234875 |
cacagagaccaatgtcaagtatcgtaattaattgttacgttgtttatctaaggcgatgcagattaatttggttgcaaa-ttgggaaattaacttgttttt |
14234777 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14234776 |
aattacttttgaatgacgagagcccggaatataattcgtatcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
14234677 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
14234676 |
gtaaatattgcaaatttaaaggcaccgtcgactttcgtac |
14234637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 39372758 - 39372519
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
39372758 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataagttgcttta |
39372659 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttatta-ttgtaacatgacaatattttcacg |
213 |
Q |
| |
|
||||| | | |||||| |||| ||||||||||||| |||| |||| | |||| ||| || |||||||||| ||| |||| |||||||||||| || |
|
|
| T |
39372658 |
aattaatact-aatgacaagagaccggaatataatttacgtcgaccgtgagtacttgttaagttatattttattatttgcaacaggacaatattttcgcg |
39372560 |
T |
|
| Q |
214 |
tgtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39372559 |
tgtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
39372519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 11165552 - 11165342
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | || | | ||| ||||||||||| ||||||||||| |||| |
|
|
| T |
11165552 |
cacagagaccaatgtcaagtaccgtagttaattgttacgttgtttatctaaggcgtttgtaaatgacatgggtgcaaaattggaaaaataacttgttttt |
11165453 |
T |
|
| Q |
115 |
aattactttt-aaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacg |
213 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || |
|
|
| T |
11165452 |
aattaatttttaaatgacgagagcccggaatgtaattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacaggataatattttcgcg |
11165353 |
T |
|
| Q |
214 |
tgtaaaaagaa |
224 |
Q |
| |
|
|||| ||||| |
|
|
| T |
11165352 |
cgtaagaagaa |
11165342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 25157585 - 25157403
Alignment:
| Q |
20 |
agaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgattttaatta |
119 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25157585 |
agaccaatgtcaagtatcgttatttattgtcatgttgtttatctaaggcgatgct------tttggttgcaaaattgggaaaataacttgtttttaatta |
25157492 |
T |
|
| Q |
120 |
cttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatatttt |
209 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||| |||| |||| | |||| ||| || |||||||||||||||||| || |||||||| |
|
|
| T |
25157491 |
cttttaaa-gacaagagaccggaatataattcgcgtcgaccgtgagtacttgttaagttatattttattattgtaacaggaaaatatttt |
25157403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 50878827 - 50878962
Alignment:
| Q |
75 |
aattaatttggttgcaaaattgggaaaataacttgattttaattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgcta |
174 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| ||||| || ||||| ||||||||||||| ||||||||||| |||| |||||||||| |||| |
|
|
| T |
50878827 |
aattaatttggttgcaaaaatggaaaaataacttgtttttagtttctttttaatgacgagagcctcgaatataattcacgtcgatcgttgatgctagcta |
50878926 |
T |
|
| Q |
175 |
aattgtattttattattgtaacatgacaatattttc |
210 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| |
|
|
| T |
50878927 |
cattgtattttattattataacatgaaaatattttc |
50878962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 50883960 - 50884117
Alignment:
| Q |
53 |
gttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgattttaattacttttaaatgacgagagcccggaatataattcg |
152 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| || |||| |||||| |||||| | | |||||||||||| |||||||||||| |
|
|
| T |
50883960 |
gttgtttatctaaggcgatgctaattaatttggttgcaaaaatgaaaaaacaacttgtttttaaaaaaaaattaatgacgagagcatggaatataattca |
50884059 |
T |
|
| Q |
153 |
tgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttc |
210 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||| ||||| || |||| |||| |
|
|
| T |
50884060 |
cgtcgatcgttgatgctagctaaattgtattttattattataacaggaaaatactttc |
50884117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 35976046 - 35975950
Alignment:
| Q |
55 |
tgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgattttaattacttttaaatgacgagagcccggaatataattcg |
152 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||| | |||||||| || |||||||||||| |
|
|
| T |
35976046 |
tgtttatctaaggcgatgctaattaatttggttgcaaaattgggaacataagttgtttttaattactttt-gaggacgagagaccagaatataattcg |
35975950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 16637017 - 16636949
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaattt |
83 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
16637017 |
cacagagaccaatgtcaagtaccgttatctattgtcacgttgtttatctaaggcgatgctaattaattt |
16636949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 27078999 - 27079162
Alignment:
| Q |
57 |
tttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataac-ttgattttaattacttttaaatgacgagagcccggaatataattcgtgt |
155 |
Q |
| |
|
||||||||||| |||| || || ||| |||||||||||||||||||||| ||| ||||||||| |||| |||||| |||| |||||||||||||| || |
|
|
| T |
27078999 |
tttatctaagg--atgctaaatagtttagttgcaaaattgggaaaataactttgtttttaattagtttt-aatgacaagagatcggaatataattcgcgt |
27079095 |
T |
|
| Q |
156 |
cgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgtgtaaaaag |
222 |
Q |
| |
|
|| || | | || | ||| || |||||||||||| ||||| || |||||| || || |||||||| |
|
|
| T |
27079096 |
cgaccatgagtactagttaagttatattttattattataacaagaaaatattctcgcgcgtaaaaag |
27079162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 16636947 - 16636849
Alignment:
| Q |
126 |
aatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgtgtaaaaagaa |
224 |
Q |
| |
|
|||||| |||| || |||||||||||| |||| || | | |||| ||| || ||||||||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
16636947 |
aatgacaagagaccagaatataattcgcgtcgaccctgagtacttgttaagttatattttattattgcaacaagacaatattttcacgcgtaaaaagaa |
16636849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 28387335 - 28387097
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |||| |
|
|
| T |
28387335 |
cacagagaccaatgtcaagtatcgtaattaattgttacgttgtttatctaaggcgatgcagattaatttggttgcaaa-ttgggaaattaacttgttttt |
28387237 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28387236 |
aattacttttaaatgacgagagcccggaatataatttgtatcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
28387137 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
||||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
28387136 |
gtaaatatttcaaatttaaaggcactgtcgactttcgtac |
28387097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 27900 - 28122
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaa-ttgggaaaataacttgattt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | || ||| ||||||| || ||||||||||||| ||| |
|
|
| T |
27900 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgtttgtaaatgatatgggtgcaaaaattaggaaaataacttgtttt |
27999 |
T |
|
| Q |
114 |
taattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacg |
213 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28000 |
taattacttttaaatgacgagagcccgaaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcgcg |
28099 |
T |
|
| Q |
214 |
tgtaaaaagaacaaatttaaagg |
236 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
28100 |
tgtaaaaagaattaatttaaagg |
28122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 35306 - 35525
Alignment:
| Q |
18 |
agagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgc-aaaattgggaaaataacttgattttaa |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||| |||||| | || | || ||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
35306 |
agagaccaatgtcaagtacagtaattaattgttacgttgtttatcaaaggcgtttgtaaatgatatgggtgcaaaaattgggaaaataacttgtttttaa |
35405 |
T |
|
| Q |
117 |
ttacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgtgt |
216 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
35406 |
ttacttttaaatgacgagagcccgaaatataattcgtgttgtccgttgatacttgctaaattgtattttattattgtaacaagacaatattttcgcgtgt |
35505 |
T |
|
| Q |
217 |
aaaaagaacaaatttaaagg |
236 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
35506 |
aaaaagaattaatttaaagg |
35525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 75681 - 75890
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
75681 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcagattaattttgttgcaaa-ttgggaaaataacttgttttt |
75779 |
T |
|
| Q |
115 |
aattactttt-aaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacg |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |
|
|
| T |
75780 |
aattactttttaaatgacgagagcccggaatgtaattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacaggataatattttcgca |
75879 |
T |
|
| Q |
214 |
tgtaaaaagaa |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
75880 |
cgtaaaaagaa |
75890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 87406 - 87615
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
87406 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatcaaaggcgatgcagattaatttcgttgcaaa-ttgggaaaataacttgttttt |
87504 |
T |
|
| Q |
115 |
aattactttt-aaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacg |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || |
|
|
| T |
87505 |
aattactttttaaatgacgagagcccggaatgtaattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacaggataatattttcgcg |
87604 |
T |
|
| Q |
214 |
tgtaaaaagaa |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
87605 |
cgtaaaaagaa |
87615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 37827 - 38035
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37827 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcagattaatttggttgcaaaattgggaaaataacttgttttt |
37926 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| |||||| |||||||||||| |||||||| ||||||||||||||||| || ||||||||| || |
|
|
| T |
37927 |
aattac-tttaaatgacgagagcccgaaatataatttgtgtcgaccgttgatgcttactaaattgcattttattattgtaacaggataatattttcgcgc |
38025 |
T |
|
| Q |
215 |
gtaaaaagaa |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
38026 |
gtaaaaagaa |
38035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 20929200 - 20928962
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
20929200 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcaaattaacttggttgcaaaattgggaaaataacttgcttta |
20929101 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
||||| | | |||||| |||| |||||||||||||| |||| |||| | |||| ||| || ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20929100 |
aattaatact-aatgacaagagaccggaatataattcacgtcgaccgtgagtacttgttaagttatattttattattgtaacatgacaatattttcgcgt |
20929002 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20929001 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
20928962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 20933071 - 20933309
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20933071 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgcttta |
20933170 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
||||| | | |||||| |||| |||||||||||||| |||| |||| | |||| ||| || |||||||||||||||||| |||||||||||| ||| |
|
|
| T |
20933171 |
aattaatact-aatgacaagagaccggaatataattcacgtcgaccgtgagtacttgttaagttatattttattattgtaacaggacaatattttcgcgt |
20933269 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20933270 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
20933309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 19185814 - 19185635
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
|||||||||||||||||||||| || || ||||| | |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
19185814 |
cacagagaccaatgtcaagtactgttatctattgtcacgttgtttatctaaggcgaaacaaattattttggttgcaaaattgggaaaataacttgttttt |
19185715 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaa |
195 |
Q |
| |
|
|||||| |||||||||||||||| || ||| |||| |||||| || |||||||||||||||||| ||||||||||||||| |
|
|
| T |
19185714 |
aattac-tttaaatgacgagagcgcgtaatgcaatttgtgtcgaccattgatgcttgctaaattgcattttattattgtaa |
19185635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 34658517 - 34658298
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| | ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| |
|
|
| T |
34658517 |
cacagagaccaatgtcaagtaccgttatctattgtcacgttgtttatctaaggcgatgcaaattaatttggctacaaaattgggaaaataactt--tttt |
34658420 |
T |
|
| Q |
115 |
a-attacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacg |
213 |
Q |
| |
|
| |||| || | |||||| |||| |||||||||||||| || | |||| | |||| ||| || |||||||||||||||||| ||||||||||| || |
|
|
| T |
34658419 |
agattaattct-aatgacaagagaccggaatataattcacgttgaccgtgagtacttgttaagttatattttattattgtaacaggacaatatttttgcg |
34658321 |
T |
|
| Q |
214 |
tgtaaaaagaacaaatttaaagg |
236 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
34658320 |
cgtaaaaagaattaatttaaagg |
34658298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 19184596 - 19184559
Alignment:
| Q |
187 |
ttattgtaacatgacaatattttcacgtgtaaaaagaa |
224 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
19184596 |
ttattgtaacaagacaatattttcgcgtgtaaaaagaa |
19184559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 19900602 - 19900840
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19900602 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgcttta |
19900701 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
||||| | | |||||| |||| |||||||||||||| |||| |||| | |||| ||| || |||||||||||||||||| |||||||||||| ||| |
|
|
| T |
19900702 |
aattaatact-aatgacaagagaccggaatataattcacgtcgaccgtgagtacttgttaagttatattttattattgtaacaggacaatattttcgcgt |
19900800 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19900801 |
gtaaaaagaacaaatttaaaggcaccatcgactttcgtac |
19900840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 11176427 - 11176636
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
11176427 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgacgcagattaatttggttgcaaa-ttgagaaaataacttgttttt |
11176525 |
T |
|
| Q |
115 |
aattactttt-aaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacg |
213 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |
|
|
| T |
11176526 |
aattactttttaaatgacgagagtccggaatgtaatttgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacaggataatattttcgag |
11176625 |
T |
|
| Q |
214 |
tgtaaaaagaa |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
11176626 |
cgtaaaaagaa |
11176636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 53 - 224
Target Start/End: Original strand, 11295786 - 11295956
Alignment:
| Q |
53 |
gttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgattttaattacttttaaatgacgagagcccggaatataattcg |
152 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11295786 |
gttgtttatctaaggcgatgtaaattaatttggttgcaaaattgggaaaataatttgtttttaattacttt-aaatgacgagagcccggaatataattta |
11295884 |
T |
|
| Q |
153 |
tgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgtgtaaaaagaa |
224 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| ||||||| ||||| |||||| || |||||||||| |
|
|
| T |
11295885 |
tgtcgaccgttgatgcttgctaaattgcattttattgttgtaactggacaacattttcgcgcgtaaaaagaa |
11295956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 23047991 - 23047796
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
|||| |||||||||||||||| ||| || ||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
23047991 |
cacaaagaccaatgtcaagtatcgttatctattgtcacgttgtttatctaaggcgatgctaattaatttggttgcaaaattgggaaaataacttgtttct |
23047892 |
T |
|
| Q |
115 |
aatt-acttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttc |
210 |
Q |
| |
|
|||| | |||| || ||| |||| |||||||||||||| ||| | || || |||| ||| || ||||| || ||||||||| |||||||||||| |
|
|
| T |
23047891 |
aattaattttttaaagacaagaggtcggaatataattcgcgtcaacggtgaatacttgttaagttatatttaataattgtaaca-gacaatattttc |
23047796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 3791173 - 3791366
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||| | || ||||| | |||||||||||||| ||||| ||||| |||| ||| ||||| ||||| ||||||| || | |
|
|
| T |
3791173 |
cacagagaccaatgtcaagtaccattatctattgtcacattgtttatctaaggtgatgctaattagtttgattgtgaaattaggaaattaacttgtttct |
3791272 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttc |
210 |
Q |
| |
|
||||| |||| |||||||||| |||||||||||||||||||| ||| || ||| ||| || ||| |||||||| ||||| || ||||||||| |
|
|
| T |
3791273 |
aattattttt--atgacgagagaccggaatataattcgtgtcgatcgtgaatacttcttaagttatatcttattattataacaagaaaatattttc |
3791366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 3828990 - 3829091
Alignment:
| Q |
54 |
ttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgattttaattacttttaaatgacgagagcccggaatataattcgt |
153 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| ||| ||||| ||||| ||||||| || |||||| |||| |||||||||| |||||||||||||||| |
|
|
| T |
3828990 |
ttgtttatctaaggtgatgctaattagtttgattgtgaaattaggaaattaacttgtttctaattattttt--atgacgagagaccggaatataattcgt |
3829087 |
T |
|
| Q |
154 |
gtcg |
157 |
Q |
| |
|
|||| |
|
|
| T |
3829088 |
gtcg |
3829091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 210
Target Start/End: Complemental strand, 3780212 - 3780057
Alignment:
| Q |
53 |
gttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgattttaattacttttaaatgacgagagcccggaatataattcg |
152 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| |||| ||||| | ||| ||||||| ||||||||| |||| ||||| |||| | |||||||||| | |
|
|
| T |
3780212 |
gttgtttatctaaggtagtgctaattagtttgattgcgaaattagaaaattaacttgtttttaattattttt--atgacaagagacaagaatataatttg |
3780115 |
T |
|
| Q |
153 |
tgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttc |
210 |
Q |
| |
|
||||| || || |||| ||| || |||||||||||||||||| || ||||||||| |
|
|
| T |
3780114 |
tgtcgatcgcgaatacttgttaagttatattttattattgtaacaggaaaatattttc |
3780057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 117321 - 117082
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
117321 |
cacagagaccaatgtcaagtaccgtaattaattgttacgttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgcttta |
117222 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttatta-ttgtaacatgacaatattttcacg |
213 |
Q |
| |
|
||||| | | |||||| |||| |||||||||||||| |||| ||| | |||| ||| || |||||||||| |||||||| |||||||||||| || |
|
|
| T |
117221 |
aattaatact-aatgacaagagaccggaatataattcacgtcgatcgtgagtacttgttaagttatattttattatttgtaacaggacaatattttcgcg |
117123 |
T |
|
| Q |
214 |
tgtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
117122 |
tgtaaaaagaacaaatttaaaggcaccgtcgactttcgtac |
117082 |
T |
|
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Target: scaffold0453 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: scaffold0453
Description:
Target: scaffold0453; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 12992 - 12783
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
12992 |
cacatagaccaatgtcaagtaccgtaattaattgttatgttgtttatctaaggcgacgcagattaatttggttgcaaa-ttgggaaaataacttgttttt |
12894 |
T |
|
| Q |
115 |
aattactttt-aaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacg |
213 |
Q |
| |
|
|||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
|
|
| T |
12893 |
aattactttttaaatgacgaaagcctagaatgtaattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacaggatgatattttcgcg |
12794 |
T |
|
| Q |
214 |
tgtaaaaagaa |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
12793 |
agtaaaaagaa |
12783 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 7846034 - 7845826
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
|||||||||||| |||||||||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
7846034 |
cacagagaccaacgtcaagtaccgttatatattgtcacattgtttatctaaggcgatgcaaattaatttggttgcaaaatttggaaaataacttgttttt |
7845935 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| ||| || | || |||||| ||| || ||| |||||||||||||| ||||||||||||||| |
|
|
| T |
7845934 |
aattac-tttaaatgacgagagcccgaaatataatttgtgccgactgtgagtgcttgttaagttatatattattattgtaacaggacaatattttcacgc |
7845836 |
T |
|
| Q |
215 |
gtaaaaagaa |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
7845835 |
gtaaaaagaa |
7845826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 7840050 - 7839842
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
||||| |||||| |||||||||||| || ||| | | || |||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||| |
|
|
| T |
7840050 |
cacagggaccaacgtcaagtaccgttatctattatcacgtcgtttatctaaggcgatacaaattaatttggttgcaaaatttgaaaaataacttgttttt |
7839951 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| ||||| || | |||||| ||| || |||||||||||||||||| |||||||||||| | |
|
|
| T |
7839950 |
aattac-tttaaatgacgagagtccggaatataatttgtgtcaaccatgagtgcttgttaagttatattttattattgtaacaggacaatattttcgcac |
7839852 |
T |
|
| Q |
215 |
gtaaaaagaa |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
7839851 |
gtaaaaagaa |
7839842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 7960959 - 7960739
Alignment:
| Q |
15 |
cacagagaccaatgtcaagtaccgtaattaattgttaagttgtttatctaaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgatttt |
114 |
Q |
| |
|
|||| ||| |||||||||||||||| || ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
7960959 |
cacatagatcaatgtcaagtaccgttatctattgtcacgttgtttatctaaggcgatgcaaattagtttggttgcaaaattgggaaaataacttgtttta |
7960860 |
T |
|
| Q |
115 |
aattacttttaaatgacgagagcccggaatataattcgtgtcgtccgttgatgcttgctaaattgtattttattattgtaacatgacaatattttcacgt |
214 |
Q |
| |
|
||||| || | |||||| |||| |||||||||||||| |||| || | | |||| ||| || ||||||| |||| |||| |||||||||||| || |
|
|
| T |
7960859 |
aattaattct-aatgacaagagaccggaatataattcccgtcgaccataagtacttgttaagttatattttaatattctaacgggacaatattttcgcgc |
7960761 |
T |
|
| Q |
215 |
gtaaaaagaacaaatttaaagg |
236 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
7960760 |
gtaaaaagaattaatttaaagg |
7960739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 4719 - 4809
Alignment:
| Q |
64 |
aaggcgatgcaaattaatttggttgcaaaattgggaaaataacttgattttaattacttttaaatgacgagagcccggaatataattcgtgtc |
156 |
Q |
| |
|
|||| ||||| ||||| |||| ||| ||||| ||||| ||||||| || |||||| ||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
4719 |
aaggtgatgctaattagtttgattgtgaaattaggaaattaacttgtttctaattattttta--tgacgagagaccggaatataatttgtgtc |
4809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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