View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10317_low_44 (Length: 251)
Name: NF10317_low_44
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_44 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40881786 - 40881544
Alignment:
| Q |
1 |
ttatattctgcaggcaagtaattaactcatcatatcatagttatatattttatttatcttaaatttaat-gatcat--ggaatgaattttgaaaaggttc |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
40881786 |
ttatattctgcaggcaagtaattaactcatcatatcatagttatatattttatttatcttaaatttaattgatcatatgtaatgaattttgaaaaggttc |
40881687 |
T |
|
| Q |
98 |
aatggaattgacttcgaggagattaaagttgacctttcaaaacgtcaccatctatctcctgaattcacaggtactatacaacaaacatgtatgtgctata |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40881686 |
aatggaattgacttcgaggagattaaagttgacctttcaaaacgtcaccatctatctcctgaattcacaggtactatacaacaaacatgtatgtgctata |
40881587 |
T |
|
| Q |
198 |
agttattactgaattgattcaccttgttggtatatcttttcat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40881586 |
agttattactgaattgattcaccttgttggtatatcttttcat |
40881544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University