View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10317_low_47 (Length: 250)

Name: NF10317_low_47
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10317_low_47
NF10317_low_47
[»] chr5 (9 HSPs)
chr5 (16-250)||(1162358-1162592)
chr5 (110-246)||(1850468-1850604)
chr5 (47-106)||(1850781-1850840)
chr5 (20-160)||(39880558-39880689)
chr5 (20-98)||(40412704-40412778)
chr5 (191-246)||(40419489-40419544)
chr5 (121-224)||(38988542-38988658)
chr5 (16-58)||(40419663-40419705)
chr5 (123-160)||(40412654-40412691)
[»] chr4 (1 HSPs)
chr4 (145-246)||(25911041-25911142)
[»] chr8 (1 HSPs)
chr8 (156-246)||(34401891-34401981)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 1162358 - 1162592
Alignment:
Q  16 agtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattgcatagagag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1162358 agtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattgtatagagag 1162457  T
Q  116 attgagaaggggtttgagacaataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcgtataaatg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162458 attgagaaggggtttgagacaataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcgtataaatg 1162557  T
Q  216 caatcagcaaattcagcaatctcataattgacaga 250  Q
    |||||||||||||||||||||||||||||||||||    
T  1162558 caatcagcaaattcagcaatctcataattgacaga 1162592  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 110 - 246
Target Start/End: Complemental strand, 1850604 - 1850468
Alignment:
Q  110 agagagattgagaaggggtttgagacaataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcgta 209  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  1850604 agagagattgcgaaggggtttgagacaataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcatc 1850505  T
Q  210 taaatgcaatcagcaaattcagcaatctcataattga 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  1850504 taaatgcaatcagcaaattcagcaatctcataattga 1850468  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 1850840 - 1850781
Alignment:
Q  47 tgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850840 tgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattg 1850781  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 39880689 - 39880558
Alignment:
Q  20 aaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattgcatagagagattg 119  Q
    ||||||||||||||||| |||||||||||||||||||||    |||||||||||||||| |||||||||||||||||     ||||  |    |||||||    
T  39880689 aaactagccatgtttgaatgcaagagttgtataaaccag----ttttgctgcaaaatctacatccctaaggctttga-----gatttaaacctgagattg 39880599  T
Q  120 agaaggggtttgagacaataattttcaagctcgtgttgtaa 160  Q
     |||||||||| |||||||||||||||||||| ||||||||    
T  39880598 tgaaggggtttaagacaataattttcaagctcatgttgtaa 39880558  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 40412778 - 40412704
Alignment:
Q  20 aaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgaga 98  Q
    ||||||||||||||||| |||||||||||||||||||||    |||||||||||||||| |||||||||||||||||||    
T  40412778 aaactagccatgtttgaatgcaagagttgtataaaccag----ttttgctgcaaaatctacatccctaaggctttgaga 40412704  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 40419544 - 40419489
Alignment:
Q  191 aacatctcaaaatgtcgtataaatgcaatcagcaaattcagcaatctcataattga 246  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40419544 aacacctcaaaatgtcgtataattgcaatcagcaaattcagcaatctcataattga 40419489  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 38988658 - 38988542
Alignment:
Q  121 gaaggggtttgagacaataattttcaagctcgtgttgtaa-------caacttgagtagcctataatgatat------aactgaacatctcaaaatgtcg 207  Q
    |||||||||| |||||||||| ||||||||| ||||||||       |||||| | ||||||||||||||||      ||||||||| |||| ||||||     
T  38988658 gaaggggtttaagacaataatgttcaagctcatgttgtaagttgtaacaacttcaatagcctataatgatattgatataactgaacacctcataatgtca 38988559  T
Q  208 tataaatgcaatcagca 224  Q
    ||||| |||||||||||    
T  38988558 tataattgcaatcagca 38988542  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 40419705 - 40419663
Alignment:
Q  16 agtaaaactagccatgtttgattgcaagagttgtataaaccag 58  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||    
T  40419705 agtaaaactagccatatttgagtgcaagagttatataaaccag 40419663  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 40412691 - 40412654
Alignment:
Q  123 aggggtttgagacaataattttcaagctcgtgttgtaa 160  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  40412691 aggggtttaagacaataattttcaagctcatgttgtaa 40412654  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 25911041 - 25911142
Alignment:
Q  145 caagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcgtataaatgcaatcagcaaattcagcaatctcataatt 244  Q
    ||||||| || ||||||||||| ||||||||||||| ||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||    
T  25911041 caagctcatggtgtaacaacttcagtagcctataataatataactgaacacctcaaaatatcatataattgcaatcagcaaattcagcaatctcataatt 25911140  T
Q  245 ga 246  Q
    ||    
T  25911141 ga 25911142  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 34401981 - 34401891
Alignment:
Q  156 tgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcgtataaatgcaatcagcaaattcagcaatctcataattga 246  Q
    ||||||||||| ||||||||||||| ||||||||||||  ||||||||||| ||||| || ||||||||| |||| | |||||||||||||    
T  34401981 tgtaacaacttcagtagcctataataatataactgaactcctcaaaatgtcatataattgaaatcagcaatttcacccatctcataattga 34401891  T

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