View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10317_low_49 (Length: 249)

Name: NF10317_low_49
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10317_low_49
NF10317_low_49
[»] chr8 (3 HSPs)
chr8 (3-223)||(36377581-36377799)
chr8 (2-41)||(4879107-4879146)
chr8 (175-239)||(4878966-4879030)
[»] chr2 (3 HSPs)
chr2 (3-223)||(31488734-31488952)
chr2 (3-83)||(39816370-39816451)
chr2 (3-48)||(42275905-42275950)
[»] chr1 (5 HSPs)
chr1 (2-239)||(29833463-29833698)
chr1 (3-80)||(4820872-4820949)
chr1 (3-80)||(4832672-4832749)
chr1 (3-48)||(10911123-10911168)
chr1 (2-41)||(2404215-2404254)
[»] chr5 (2 HSPs)
chr5 (3-223)||(11850306-11850524)
chr5 (3-69)||(22600631-22600697)
[»] scaffold0050 (1 HSPs)
scaffold0050 (3-239)||(31201-31437)
[»] chr4 (4 HSPs)
chr4 (3-65)||(13776203-13776265)
chr4 (3-86)||(8739154-8739237)
chr4 (14-55)||(8750935-8750976)
chr4 (2-41)||(45166828-45166867)
[»] chr3 (1 HSPs)
chr3 (3-65)||(4532888-4532950)
[»] chr7 (6 HSPs)
chr7 (3-48)||(8731543-8731588)
chr7 (3-48)||(19788849-19788894)
chr7 (3-43)||(16497227-16497267)
chr7 (2-41)||(3934711-3934750)
chr7 (2-41)||(8414878-8414917)
chr7 (175-239)||(3934570-3934634)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 36377581 - 36377799
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattttcttctttgtcctcaagacaataattgtaaccttctgatccctgagatgaattt 102  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||| | || |||||| || |  | |  |||||| |     
T  36377581 atcattctccccgggttggaagagactcgtcctcgagtcaagcttttcttcttcttcctcaagacaacatttctaacctcctaa--cataggatgaaatg 36377678  T
Q  103 agccattttagaaatcatctcttcgactaccattttcaaatccttcagttgtctagtccaatgtaatccacgggaaaaatcaatagtaacatcttcccaa 202  Q
    ||||||| | |||| | | ||  |||||||||||||  ||||||||||||||  ||| ||| |||||||| |||||||||||||||||||||||||||||    
T  36377679 agccattcttgaaaacttgtccccgactaccattttagaatccttcagttgttgagttcaaagtaatccaagggaaaaatcaatagtaacatcttcccaa 36377778  T
Q  203 agtggcctaggaattggacga 223  Q
     ||||| |||||| |||||||    
T  36377779 ggtggcttaggaactggacga 36377799  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 4879146 - 4879107
Alignment:
Q  2 catcattctccccgggttggaagagactcgtcctcgagtc 41  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  4879146 catcattctccccgggttggagaagactcgtcctcgagtc 4879107  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 4879030 - 4878966
Alignment:
Q  175 ggaaaaatcaatagtaacatcttcccaaagtggcctaggaattggacgaggcatgtatacctttg 239  Q
    ||||||||| ||| ||||| |||||||| ||||| ||||||||||||| | ||| |||| |||||    
T  4879030 ggaaaaatccatactaacaacttcccaaggtggcttaggaattggacgggacatatataactttg 4878966  T

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Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 31488952 - 31488734
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattttcttctttgtcctcaagacaataattgtaaccttctgatccctgagatgaattt 102  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||  |||||||||||| | || |||||| || |  | |  |||||| |     
T  31488952 atcattctctccgggttggaagagactcgtcctcgagtcaagcttttcttcttcttcctcaagacaacatttctaacctcctaa--cataggatgaaatg 31488855  T
Q  103 agccattttagaaatcatctcttcgactaccattttcaaatccttcagttgtctagtccaatgtaatccacgggaaaaatcaatagtaacatcttcccaa 202  Q
    ||||||| | |||| | | ||  |||||||||||||  ||||||||||||||  ||| ||| |||||||| |||||||||||||||||||||||||||||    
T  31488854 agccattcttgaaaacttgtccccgactaccattttagaatccttcagttgttgagttcaaagtaatccaagggaaaaatcaatagtaacatcttcccaa 31488755  T
Q  203 agtggcctaggaattggacga 223  Q
     ||||| |||||| |||||||    
T  31488754 ggtggcttaggaactggacga 31488734  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 39816370 - 39816451
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattttctt-ctttgtcctcaagacaataattgtaaccttc 83  Q
    ||||||||| |||||||||| |||||||||||||||| |||||||||||| |||  |||||||||||| |||||||||||||    
T  39816370 atcattctctccgggttggatgagactcgtcctcgagacaagattttcttgcttcatcctcaagacaacaattgtaaccttc 39816451  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 42275905 - 42275950
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattt 48  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||    
T  42275905 atcattctccacgggttggaagagactcatcctcgagtcaagattt 42275950  T

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Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 29833463 - 29833698
Alignment:
Q  2 catcattctccccgggttggaagagactcgtcctcgagtc--aagattttcttctttgtcctcaagacaataattgtaaccttctgatccctgagatgaa 99  Q
    |||||||||||||||||||||  |||||||||||||||||  ||| | |||||||| ||||||||||||| | ||| ||||| ||||  | |  ||||||    
T  29833463 catcattctccccgggttggagaagactcgtcctcgagtcggaag-tcttcttcttcgtcctcaagacaaca-ttgcaacctcctga--catatgatgaa 29833558  T
Q  100 tttagccattttagaaatcatctcttcgactaccattttcaaatccttcagttgtctagtccaatgtaatccacgggaaaaatcaatagtaacatcttcc 199  Q
     |||| |||| | |||| | | |||||||||||||||||  ||||||||||| ||  ||||||| |||||| | |||||||||||||||||||||||| |    
T  29833559 attagtcattcttgaaaacttgtcttcgactaccattttagaatccttcagtcgttgagtccaaagtaatctaagggaaaaatcaatagtaacatctttc 29833658  T
Q  200 caaagtggcctaggaattggacgaggcatgtatacctttg 239  Q
    ||| ||||| ||||||||||||||||||| |||| |||||    
T  29833659 caaggtggcttaggaattggacgaggcatatataactttg 29833698  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 4820949 - 4820872
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattttcttctttgtcctcaagacaataattgtaacc 80  Q
    ||||||||||| |||||||||||||||| | |||||||||||| |||||||||  |||||||||||| ||||||||||    
T  4820949 atcattctccctgggttggaagagactcttgctcgagtcaagaatttcttcttcatcctcaagacaacaattgtaacc 4820872  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 4832749 - 4832672
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattttcttctttgtcctcaagacaataattgtaacc 80  Q
    ||||||||||| |||||||||||||||| | |||||||||||| |||||||||  |||||||||||| ||||||||||    
T  4832749 atcattctccctgggttggaagagactcttgctcgagtcaagaatttcttcttcatcctcaagacaacaattgtaacc 4832672  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 10911168 - 10911123
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattt 48  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  10911168 atcattctccacaggttggaagagactcgtcctcgagtcaagattt 10911123  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 2404215 - 2404254
Alignment:
Q  2 catcattctccccgggttggaagagactcgtcctcgagtc 41  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  2404215 catcattctccccgggttggagaagactcgtcctcgagtc 2404254  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 11850306 - 11850524
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattttcttctttgtcctcaagacaataattgtaaccttctgatccctgagatgaattt 102  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||| | || |||||| || |  | |  |||||| |     
T  11850306 atcattctccccgggttggaagagactcgtcctcgagtcaagctcttcttcttcttcctcaagacaacatttctaacctcctaa--cataggatgaaatg 11850403  T
Q  103 agccattttagaaatcatctcttcgactaccattttcaaatccttcagttgtctagtccaatgtaatccacgggaaaaatcaatagtaacatcttcccaa 202  Q
    ||||||| | |||| | | ||  |||||||||||||  ||||||| ||||||  ||| ||| |||||||| |||||||||||||| |||| |||||||||    
T  11850404 agccattcttgaaaacttgtccccgactaccattttagaatcctttagttgttgagttcaaagtaatccaagggaaaaatcaatattaacgtcttcccaa 11850503  T
Q  203 agtggcctaggaattggacga 223  Q
     ||||| |||||| |||||||    
T  11850504 ggtggcttaggaactggacga 11850524  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 22600697 - 22600631
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattttcttctttgtcctcaagacaa 69  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||    
T  22600697 atcattctccccgggttggaagagactcgtcctcgagtcaagctcttcttcttcttcctcaagacaa 22600631  T

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Target: scaffold0050 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 31437 - 31201
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattttcttctttgtcctcaagacaataattgtaaccttctgatccctgagatgaattt 102  Q
    |||||||||||| |||| ||||||||||||| |||||||||||||| |||||| ||| || || ||| | || |  | |  |   || |  |||||| |     
T  31437 atcattctccccaggtttgaagagactcgtcatcgagtcaagatttccttcttcgtcttcgagtcaagatttctttcttcgtctaccatatgatgaaatg 31338  T
Q  103 agccattttagaaatcatctcttcgactaccattttcaaatccttcagttgtctagtccaatgtaatccacgggaaaaatcaatagtaacatcttcccaa 202  Q
    ||||||||| |||  | | |||||||||||||||||  ||||||| |||| || ||||||| |||||||| ||||||||| |||||||||||||||||||    
T  31337 agccatttttgaagacttgtcttcgactaccattttggaatcctttagttttcgagtccaaagtaatccaagggaaaaattaatagtaacatcttcccaa 31238  T
Q  203 agtggcctaggaattggacgaggcatgtatacctttg 239  Q
     ||||| |||||  | ||||||  ||||||| |||||    
T  31237 ggtggcttaggatctagacgagatatgtataactttg 31201  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 13776265 - 13776203
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattttcttctttgtcctcaag 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||    
T  13776265 atcattctccccgggttggaagagactcgtcctcgagtcaagatttccttgttcatcctcaag 13776203  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 8739237 - 8739154
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattttcttctttgtcctcaagacaataattgtaaccttctga 86  Q
    |||||||||| | ||||||| |||||||||||| |||||||||||||||   |  ||||||||| || ||||||||||||||||    
T  8739237 atcattctcctcaggttggatgagactcgtcctagagtcaagattttctagctcatcctcaagaaaacaattgtaaccttctga 8739154  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 8750935 - 8750976
Alignment:
Q  14 cgggttggaagagactcgtcctcgagtcaagattttcttctt 55  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  8750935 cgggttggaagagactcgtccccgagtcaatattttcttctt 8750976  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 45166867 - 45166828
Alignment:
Q  2 catcattctccccgggttggaagagactcgtcctcgagtc 41  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  45166867 catcattctccccgggttggagaagactcgtcctcgagtc 45166828  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 4532950 - 4532888
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattttcttctttgtcctcaag 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||    
T  4532950 atcattctccccgggttggaagagactcgtcctcgagtcaagatttccttgttcatcctcaag 4532888  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 8731543 - 8731588
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattt 48  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  8731543 atcattctccacaggttggaagagactcgtcctcgagtcaagattt 8731588  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 19788894 - 19788849
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaagattt 48  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||    
T  19788894 atcattctccccaggttggaagagactcgtcctcgagtcatgattt 19788849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 16497227 - 16497267
Alignment:
Q  3 atcattctccccgggttggaagagactcgtcctcgagtcaa 43  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  16497227 atcattctccccgggttggaaaagactcgtcctcgagtcaa 16497267  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 3934750 - 3934711
Alignment:
Q  2 catcattctccccgggttggaagagactcgtcctcgagtc 41  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  3934750 catcattctccccgggttggataagactcgtcctcgagtc 3934711  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 8414878 - 8414917
Alignment:
Q  2 catcattctccccgggttggaagagactcgtcctcgagtc 41  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  8414878 catcattctccccgggttggagaagactcgtcctcgagtc 8414917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 3934634 - 3934570
Alignment:
Q  175 ggaaaaatcaatagtaacatcttcccaaagtggcctaggaattggacgaggcatgtatacctttg 239  Q
    ||||||||| ||| ||||| |||||||| ||||| ||||||||||||| | ||| |||| |||||    
T  3934634 ggaaaaatccatactaacaacttcccaaggtggcttaggaattggacgggacatatataactttg 3934570  T

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