View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_5 (Length: 515)
Name: NF10317_low_5
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 13 - 499
Target Start/End: Original strand, 42086785 - 42087271
Alignment:
| Q |
13 |
gaacatggtgcaattttcaagtccaaaaatccaaccattgagaactattgcatgattggtctaacataccacatggatcaacattgtaccatttttcaag |
112 |
Q |
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| T |
42086785 |
gaacatggtgcaattttcaagtccaaaaatccaaccattgagaactattgcatgattggtctaacataccacatggatcaacattgtaccatttttcaag |
42086884 |
T |
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| Q |
113 |
tgttgttgtcaagggaatttctgcatgatcatcatttcttaaaagttgatttcctctgtcctcaactttctctgtccatgttgtgcttctttcattttga |
212 |
Q |
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| T |
42086885 |
tgttgttgtcaagggaatttctgcatgatcatcatttcttaaaagttgatttcctctgtcctcaactttctctgtccatgttgtgcttctttcattttga |
42086984 |
T |
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| Q |
213 |
tcatctgaataaattaccactttatcctccaaaccctcatttgaaaaccttggctttgtttcttcaaacctgctattgttgtatccatttcctgaaccac |
312 |
Q |
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| T |
42086985 |
tcatctgaataaattaccactttatcctccaaaccctcatttgaaaacctttgctttgtttcttcaaacctgctattgttgtatccatttcttgaaccac |
42087084 |
T |
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| Q |
313 |
catcttctgtgctattttcctttgcttcccttcctccatcatgagatgtctccaccatataatttagcttctgaacctgcgaggnnnnnnntaatcacac |
412 |
Q |
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| T |
42087085 |
catcttctgtgctattttcctttgcttcccttcctccatcatgagatgtttccaccatataacttagcttctgaacctgcgaggaaaaaaaaaatcacac |
42087184 |
T |
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| Q |
413 |
gggtaagcttaagttcaactcatttaattaatcgagcctaatacgaagcttgagtaaataaataaacaaacttaaccgaatattttg |
499 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087185 |
ggttaagcttaagttcaactcatttaattaatcgagcctaatacgaagcttgagtaaataaataaacaaacttaaccgaatattttg |
42087271 |
T |
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