View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_53 (Length: 242)
Name: NF10317_low_53
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_53 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 40882085 - 40881852
Alignment:
| Q |
25 |
ttttgttttcgtttttgatttatcttgcttcctatatttcatatatataaaagacaattaatggcaatatgagtcaaatttaaaccttgaagtctgtgaa |
124 |
Q |
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| T |
40882085 |
ttttgttttcgtttttgatttatcttgcttcctatatttgatatatataaaagacaattaatggcaatatgagtcaaatttaaaccttgaagtctgtgaa |
40881986 |
T |
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| Q |
125 |
tccttgctaggtcgttatctcattcctcaaagagttttgt---------------atacaatgagataagagagagaaatgaagccaaagt-ggccccaa |
208 |
Q |
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| T |
40881985 |
tccttgctaggtcgttatctcattcctcaaagagttttgttaattaaaagaaagaatacaatgagataagagagagaaatcaagccaaagtgggtcccaa |
40881886 |
T |
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| Q |
209 |
acagaaaaggaaagtggaggtgaagcagttgaat |
242 |
Q |
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| T |
40881885 |
acagaaaaggaaagtggaggtgaagcagttgaat |
40881852 |
T |
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