View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10317_low_56 (Length: 238)
Name: NF10317_low_56
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_56 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 34261543 - 34261656
Alignment:
| Q |
1 |
ccaatgagtgagtaatccaactgaagcaacaagttttcttctctcctatatagagcaaagcaaaccatgtggtagctagtctgtttccattgacatttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34261543 |
ccaatgagtgagtaatccaactgaagcaacaagttttcttctctcctatatagagcaaagcaaaccatgtggtagctattctgtttccattgacatttga |
34261642 |
T |
|
| Q |
101 |
tttaacattattat |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34261643 |
tttaacattattat |
34261656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 34261706 - 34261780
Alignment:
| Q |
164 |
gtatagtaagagagattccggagaataaaatattgtttgacaaagtttgnnnnnnngggaaaaagacacggaaag |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34261706 |
gtatagtaagagagattccggagaataaaatattgtttgacaaagtttgaaaaaaagggaaaaagacacggaaag |
34261780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University