View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_59 (Length: 226)
Name: NF10317_low_59
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 2804103 - 2803912
Alignment:
| Q |
11 |
gagatgaatatatttgtgatgacaaagtttgcacatattcttccttaaaaagtttttaaattgcgaatattacatgtggaattcaacatttgagatttgt |
110 |
Q |
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| T |
2804103 |
gagatgaatatatttgtgatgacaaagtttgcacatattctcccttagaaagcttttaagttgcgaataatacatgtggaattcaacatttgagatttgt |
2804004 |
T |
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| Q |
111 |
caaaacaaattgaattgtcctctctcnnnnnnnnnnnttgaattgctaataagtagnnnnnnnnggtgagagtcaagatatattacatctaataag |
206 |
Q |
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| T |
2804003 |
caaaacaaattgaattgtcctctctc---aaaaaaaattgaattgctaataagtag-aaaaaaaggtgagagtcaagatatattacatctaataag |
2803912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 4252987 - 4252862
Alignment:
| Q |
11 |
gagatgaatatatttgtgatgacaaagtttgcacatattcttccttaaaaagtttttaaattgcgaatattacatgtggaattcaacatttgagatttgt |
110 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |||| |||||||| ||||||||||||||||| |
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| T |
4252987 |
gagatgaatatatttgtgatgacaaagtttacacatattcttccttaaaaagcttttaagttgcgaatgttacgtgtggaatgcaacatttgagatttgt |
4252888 |
T |
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| Q |
111 |
caaaacaaattgaattgtcctctctc |
136 |
Q |
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||||||||||||||||||||| |||| |
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| T |
4252887 |
caaaacaaattgaattgtcctatctc |
4252862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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