View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_6 (Length: 493)
Name: NF10317_low_6
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 493
Target Start/End: Original strand, 4775818 - 4776299
Alignment:
| Q |
16 |
aatttgaagttcttgtaacaaattttgaacccatattaactcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgtt |
115 |
Q |
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| T |
4775818 |
aatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgtt |
4775917 |
T |
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| Q |
116 |
ggttgcttcttgcatgaccaagagataatattagggccaatataaattaaataagcacctgtt----tcctgtcaattgtgtctcctgcccaatctgcat |
211 |
Q |
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| T |
4775918 |
ggttgcttcttgcatgaccaagagataatattagggccaaaataaattaaataagcacctgttgatttcctgtcaattgtgtctcctgcctaatctgcat |
4776017 |
T |
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| Q |
212 |
cacaaaagcttgtgaggcttgtatttgaagatcttgtgagatggagtccattggagatggtggatttgagatagcgcaatactctcttcaaggcttgcat |
311 |
Q |
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| T |
4776018 |
cacaaaagcttgtgaggtttgtatttgaagatcttgtgagatggagtccattggagatggtggatttgagatagcgcaatactctcttcaaggcttgcat |
4776117 |
T |
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| Q |
312 |
atctgtcacagtaggagcttgcatttgttatgctagtttattcactggaaatgctatgtctgggcgagtgattgaaaggtagtgtaaggcaccaagtata |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4776118 |
atctgtcacagtaggagcttgcatttgttatgctagtttattcactggaaatgcaatgtctgggcgagtgattgaaaggtagtgtaaggcaccaagcata |
4776217 |
T |
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| Q |
412 |
ctgcgaaattccttactgtcacagtatgtggagtcgggtttaggttgtgagcagaatgaggtggccatgggagtagacacag |
493 |
Q |
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| T |
4776218 |
ctgcgaaattccttactgtcacagtatgtggagtcgggtttaggttgtgagcagaatgaggtggccatgggagtagacacag |
4776299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 43061179 - 43061400
Alignment:
| Q |
16 |
aatttgaagttcttgtaacaaattttgaacccatattaactcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgtt |
115 |
Q |
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||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||||| |||| |
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| T |
43061179 |
aatttgaagttcttgtaacaagttttgaacccatattaattcctgagtagtggctgctatagtccgatattcagcttcagttgatgattttgcaactgtt |
43061278 |
T |
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| Q |
116 |
ggttgcttcttgcatgaccaagagataatattagggccaatataaattaaataagcacctgtt----tcctgtcaattgtgtctcctgcccaatctgcat |
211 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43061279 |
ggctgcttcttgcatgaccaagagataatattagggccaaaataaatgaaataagcacctgttcatatcctgtcaattgtgtctcctgcccaatctgcat |
43061378 |
T |
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| Q |
212 |
cacaaaagcttgtgaggcttgt |
233 |
Q |
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| T |
43061379 |
cacaaaagtttgtgaggcttgt |
43061400 |
T |
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