View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10317_low_60 (Length: 212)

Name: NF10317_low_60
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10317_low_60
NF10317_low_60
[»] chr1 (9 HSPs)
chr1 (18-136)||(8016214-8016332)
chr1 (18-74)||(46252677-46252733)
chr1 (39-76)||(1565551-1565588)
chr1 (19-72)||(5886990-5887043)
chr1 (127-156)||(8016160-8016189)
chr1 (28-85)||(38503470-38503527)
chr1 (18-54)||(3223706-3223742)
chr1 (18-74)||(10809364-10809420)
chr1 (20-56)||(29635384-29635420)
[»] chr6 (2 HSPs)
chr6 (18-74)||(3528822-3528878)
chr6 (18-66)||(281843-281891)
[»] chr7 (1 HSPs)
chr7 (18-73)||(25670581-25670636)
[»] chr5 (1 HSPs)
chr5 (20-74)||(11707074-11707128)
[»] chr2 (3 HSPs)
chr2 (28-74)||(35379021-35379067)
chr2 (20-74)||(44443340-44443394)
chr2 (18-74)||(43199779-43199835)
[»] chr8 (1 HSPs)
chr8 (18-74)||(7714261-7714317)
[»] chr3 (1 HSPs)
chr3 (22-74)||(41633379-41633431)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 8016332 - 8016214
Alignment:
Q  18 acttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatagataacagaaactcatatgaaaacaataactccattttattttt 117  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8016332 acttatgacatgttcataacttgttttcagcttattttcctaagctctccaagatagataacagaaactcatatgaaaacaataactccattttattttt 8016233  T
Q  118 tgttatagaaaaatggctt 136  Q
    |||||||||||||||||||    
T  8016232 tgttatagaaaaatggctt 8016214  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 46252677 - 46252733
Alignment:
Q  18 acttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 74  Q
    |||||||| ||||| |||| |||||||||| |||||||| | |||||||||||||||    
T  46252677 acttatgacatgttcataagttgttttcaggttattttcataagctctccaagatag 46252733  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 1565551 - 1565588
Alignment:
Q  39 tgttttcagcttattttcctgagctctccaagatagat 76  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  1565551 tgttttcagcttattttcatgagctctccaaaatagat 1565588  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 5886990 - 5887043
Alignment:
Q  19 cttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagat 72  Q
    ||||||| ||||| |||| ||||||||||||||||||| | || ||||||||||    
T  5886990 cttatgacatgttcataagttgttttcagcttattttcgtaagttctccaagat 5887043  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 8016189 - 8016160
Alignment:
Q  127 aaaatggctttgcatgttaaagctttgatg 156  Q
    ||||||||||||||||||||||||||||||    
T  8016189 aaaatggctttgcatgttaaagctttgatg 8016160  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 38503470 - 38503527
Alignment:
Q  28 tgtttataacttgttttcagcttattttcctgagctctccaagatagataacagaaac 85  Q
    |||| |||| ||||||||||||||||||| | || |||||||||||| ||||| ||||    
T  38503470 tgttcataagttgttttcagcttattttcataagttctccaagatagctaacaaaaac 38503527  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 3223742 - 3223706
Alignment:
Q  18 acttatgaaatgtttataacttgttttcagcttattt 54  Q
    |||||||| |||||||||| |||||||||||||||||    
T  3223742 acttatgacatgtttataagttgttttcagcttattt 3223706  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 10809420 - 10809364
Alignment:
Q  18 acttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 74  Q
    |||||||| ||||||||||  |||||||||||||||||| | || ||||||| ||||    
T  10809420 acttatgacatgtttataatatgttttcagcttattttcataagttctccaatatag 10809364  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 29635420 - 29635384
Alignment:
Q  20 ttatgaaatgtttataacttgttttcagcttattttc 56  Q
    |||||| |||||||||| |||||||||||||||||||    
T  29635420 ttatgacatgtttataagttgttttcagcttattttc 29635384  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 3528878 - 3528822
Alignment:
Q  18 acttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 74  Q
    |||||||| ||||  |||||||||||||| ||||||||| | |||||||||||||||    
T  3528878 acttatgacatgtccataacttgttttcatcttattttcataagctctccaagatag 3528822  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 281843 - 281891
Alignment:
Q  18 acttatgaaatgtttataacttgttttcagcttattttcctgagctctc 66  Q
    |||||||| |||| ||||| ||||||||||||||||| | |||||||||    
T  281843 acttatgacatgtctataagttgttttcagcttatttccatgagctctc 281891  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 25670581 - 25670636
Alignment:
Q  18 acttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagata 73  Q
    |||||||| ||||| |||| |||||||||||||||||||   ||||||||||||||    
T  25670581 acttatgacatgttaataaattgttttcagcttattttcacaagctctccaagata 25670636  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 11707128 - 11707074
Alignment:
Q  20 ttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 74  Q
    |||||| |||||||||| |||||||||||||||||||   |||||| ||||||||    
T  11707128 ttatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatag 11707074  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 35379021 - 35379067
Alignment:
Q  28 tgtttataacttgttttcagcttattttcctgagctctccaagatag 74  Q
    |||| |||| ||||||||||||||||||| | |||||||||||||||    
T  35379021 tgttcataagttgttttcagcttattttcataagctctccaagatag 35379067  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 44443394 - 44443340
Alignment:
Q  20 ttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 74  Q
    |||||||||||| |||| ||||||||||||||||||| |  |||||| |||||||    
T  44443394 ttatgaaatgttcataagttgttttcagcttattttcatatgctctcaaagatag 44443340  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 43199779 - 43199835
Alignment:
Q  18 acttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 74  Q
    |||| ||| |||||||||| |||||||||||||| |||| | ||| |||||||||||    
T  43199779 acttgtgacatgtttataagttgttttcagcttaatttcataagccctccaagatag 43199835  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 7714317 - 7714261
Alignment:
Q  18 acttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 74  Q
    |||||||||||||  || |  |||||||| ||||||||| |||||||||||||||||    
T  7714317 acttatgaaatgtcgatgagctgttttcaacttattttcatgagctctccaagatag 7714261  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 41633431 - 41633379
Alignment:
Q  22 atgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 74  Q
    |||| |||| ||||| ||||||||||||||||||| | |||||||||| ||||    
T  41633431 atgacatgtctataaattgttttcagcttattttcataagctctccaaaatag 41633379  T

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